| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 17,482,573 – 17,482,693 |
| Length | 120 |
| Max. P | 0.594907 |
| Location | 17,482,573 – 17,482,693 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 83.50 |
| Mean single sequence MFE | -40.45 |
| Consensus MFE | -29.32 |
| Energy contribution | -30.52 |
| Covariance contribution | 1.20 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.594907 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17482573 120 + 20766785 AGCACUCAACAAAAAAACUUGACUUUCUACUUCACCUGGGCGCUUCCAGUUUGGUGUGGUUUAUCUACUUACCCAUCGUGGCAAUUGUGGCGCUGCAGGUCAGCCCCAUGUGGCGCUACA .((......(((......)))...........((((((((....)))))...((((.(((..........))))))))))))...((((((((..((((......)).))..)))))))) ( -34.80) >DroVir_CAF1 13452 120 + 1 AGCACUCCAGCAAGAAGCUGGACUUUCUUUUGCAUUUGGGUGCAUCCAGUUUGGUGUGGUUCAUCUACUUGCCCAUUGUAGCUAUUGUGGCGUUACAGGUGAGUCCCAUGUGGCGCUACA (((..((((((.....))))))........((((..((((((((((......)))))(((......))).))))).)))))))..((((((((((((((......)).)))))))))))) ( -43.90) >DroGri_CAF1 14486 120 + 1 AGCAUUCGAGCAAGAAGCUGGACUUUUUAUUGCACUUGGGUGCGUCCAGUUUGGUGUGGUUCAUCUACUUGCCGAUUGUCGCAAUUGUUGCGCUGCAAGUGAGUCCCAUGUGGCGCUACA .(((.(((.((((((((((((((........((((....)))))))))))))((((.....))))..)))))))).)))......(((.((((..((.(.(....)).))..)))).))) ( -44.00) >DroWil_CAF1 18012 120 + 1 AGCAUUCCACAAAAAAAUUAGAUUUCCUUUUACAUUUGGGUGCUUCCAGUUUGGUUUGGUUCAUCUAUUUGCCCAUUGUGGCCAUAGUGGCCCUACAAGUGAGCCCCAUGUGGCGCUAUA (((...(((((.......((((......))))....((((.(((..(.....(((.(((.....)))...)))..((((((((.....))))..)))))..)))))))))))).)))... ( -31.60) >DroMoj_CAF1 16004 120 + 1 AGCACUCCAGCAAGAAGCUGGACUUUCUAUUGCAUUUGGGCGCCUCCAGCUUGGUGUGGUUCAUCUACCUGCCCAUUGUGGCUAUUGUGGCGUUGCAGGUGAGUCCCAUGUGGCGGUACA (((..((((((.....)))))).........(((..((((((((........)))..(((......))).))))).))).)))..((((.(((..((((......)).))..))).)))) ( -42.50) >DroAna_CAF1 13721 120 + 1 AGCACUCCAGUAAAAAACUGGACUUCCUGUUGCACCUGGGCGCCUCCAGCUUGGUGUGGUUUAUUUACCUGCCCAUCGUGGCCAUCGUGGCGCUGCAGGUCAGUCCCAUGUGGCGCUACA .((..((((((.....))))))..........(((.((((((((........)))..(((......))).)))))..)))))....(((((((..((((......)).))..))))))). ( -45.90) >consensus AGCACUCCAGCAAAAAACUGGACUUUCUAUUGCACUUGGGCGCCUCCAGUUUGGUGUGGUUCAUCUACUUGCCCAUUGUGGCAAUUGUGGCGCUGCAGGUGAGUCCCAUGUGGCGCUACA .((..((((((.....))))))..........(((.(((((....((.....)).((((.....))))..)))))..)))))....(((((((((((((......)).))))))))))). (-29.32 = -30.52 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:37 2006