Locus 543

Sequence ID 2R_DroMel_CAF1
Location 2,859,568 – 2,859,673
Length 105
Max. P 0.707578
window1011

overview

Window 1

Location 2,859,568 – 2,859,673
Length 105
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 74.56
Mean single sequence MFE -29.57
Consensus MFE -13.78
Energy contribution -14.48
Covariance contribution 0.70
Combinations/Pair 1.24
Mean z-score -1.89
Structure conservation index 0.47
SVM decision value 0.37
SVM RNA-class probability 0.707578
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2859568 105 - 20766785
UGCAAGUCAUGGGUAAGUUAAAAAUUAUACUAUUC-CCAGAGUUCC--CCAGAAUCUGGGAA-UGCUCUGGUCGAUCCUAUUUUCUUGGGUGGGUCUUAACUUUUCAGC
.........((((.(((((((..............-(((((((..(--((((...)))))..-.)))))))..((.(((((((....)))))))))))))))))))).. ( -30.80)
>DroVir_CAF1 11389 98 - 1
UGCAAGUCAUGGGUAAGUUAAGAAUUUUGAUUACUGCGCCAA-CUUCUCUC-AAG-----GA-AGUUGCGCGCCAGCCUAUCUUCUUGGGCGGGUU--GAAUUUUCAG-
..(((.((.(((((((.(((((...))))))))))(((((((-(((((...-..)-----))-))))).))))))(((((......))))))).))--).........- ( -29.50)
>DroSec_CAF1 11253 105 - 1
UGCAAGUCAUGGGUAAGUUAAAAAUUAUACUUUUC-CCAGAGUUCC--CCAGAAUAGGGGAA-UGCUCUGGUCGAUCCUACUUUCUUGGGUGGGUCUAAACUUUUCAGC
.........((((.(((((................-((((((((((--((......))))).-.)))))))..((.(((((((....)))))))))..))))))))).. ( -32.90)
>DroSim_CAF1 17955 105 - 1
UGCAAGUCAUGGGUAAGUUAAAAAUUAUGCUUUUC-CCAGAGUUCC--CCAGAAUAGGGGAA-UGCUCUGGUCGAUCCUACUUUCUUGGGUGGGUCUAAACUUUUCAGC
.........((((.(((((................-((((((((((--((......))))).-.)))))))..((.(((((((....)))))))))..))))))))).. ( -32.90)
>DroEre_CAF1 11065 89 - 1
UGCAAGUCAUGGGUAAUUUGAAAAUGCUUAUUUUU-CCAGAG------------------AA-UGCUCUGGUCGAACCUAUUGUUUUGGGUGGGUCUAAAAUUUUCAGC
.................((((((((..........-((((((------------------..-..))))))..((.((((((......))))))))....)))))))). ( -18.90)
>DroYak_CAF1 13072 106 - 1
UUCAAGUUAUGGGUAAGUUGAAAAUGCUGCUUUUC-CCAGAGUUUC--CCAGUUUUGGGAAAUGGCUCUGGUCGAACCUAUUUUCUUGGGUGGGCCUCAAAUUUUCAGC
................(((((((((...(((((((-((((((....--....)))))))))).)))...((((..(((((......))))).))))....))))))))) ( -32.40)
>consensus
UGCAAGUCAUGGGUAAGUUAAAAAUUAUGCUUUUC_CCAGAGUUCC__CCAGAAU_GGGGAA_UGCUCUGGUCGAUCCUAUUUUCUUGGGUGGGUCUAAAAUUUUCAGC
.........((((.(((((.................(((((((.....((.......)).....))))))).....(((((((....)))))))....))))))))).. (-13.78 = -14.48 +   0.70)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:19 2006