| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 17,481,871 – 17,481,991 |
| Length | 120 |
| Max. P | 0.583681 |
| Location | 17,481,871 – 17,481,991 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 79.72 |
| Mean single sequence MFE | -34.98 |
| Consensus MFE | -20.08 |
| Energy contribution | -20.62 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.41 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.57 |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.583681 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17481871 120 - 20766785 AGACGAGCAGGAACACCAGGUACAUCUCCAGUAGAUUCUGCUGAUCGUACGAGUACUGGUAGGUAAGUGGAUGUGCGGCCGAGUUGUUCGGAUGCAAGUUGACCAGAUGUAUGUCGUAGU .(((.....((....))..((((((((.((((((...))))))...(((((..((((........))))..)))))((.(((.((((......)))).))).)))))))))))))..... ( -34.90) >DroVir_CAF1 12706 120 - 1 AGACGAGCAUAAAUAUGAGAUACAUUUCCAGCAGAUUCUGCUGAUCGUACGGGUACUGAAAGGUCAGCGGAUGUGCGGCCGAAUCAUUCGGAUGCACAUUCACCAAGUUGAUAUCAUACU .............(((((..........((((((...))))))((((....(((.((((....)))).(((((((((.((((.....)))).))))))))))))....)))).))))).. ( -37.40) >DroGri_CAF1 13782 120 - 1 AGACCAGCAUGAAAAUCAAAUACAUUUCGAGCAGAUUUUGCUGAUCGUACGGAUACUGAAAGGUCAGCGGAUGUGCCACCGAAUUGUUUGGAUGCACAUUCACCAGAUUGAUGUCAUACU .(((..((.(((((..........))))).)).(((((.(((((((...(((...)))...)))))))((((((((..((((.....))))..))))))))...)))))...)))..... ( -32.30) >DroWil_CAF1 17311 120 - 1 AGACGAGUAGAAAGAUUAGAUACAUUUCCAGCAAAUUUUGCUGAUCGUAAGAGUAUUGAAACGUUAGCGGAUGUGCAGCUGAGUUAUUUGGAUGCACAUUGACCAAAUGGAUGUCAUAAU .((((.((.((.......(((((.....(((((.....))))).((....)))))))......)).)).((((((((.(..((...))..).))))))))..((....)).))))..... ( -28.42) >DroMoj_CAF1 15288 120 - 1 AGACCAACAUAAAGAUGAGAUACAUUUCCAGCAGAUUCUGCUGAUCGUACGGAUACUGAUAGGUCAGCGGAUGUGCGGCCGAGUUAUUCGGAUGCACAUUCACCAAGUUGAUGUCAUACU .(((((((.....(((((((....))))((((((...)))))))))....((...((((....)))).(((((((((.(((((...))))).))))))))).))..))))..)))..... ( -38.20) >DroAna_CAF1 13014 120 - 1 AAACCAGAAGGAAUACGAGGUACAUCUCCAGCAGAUUCUGCUGAUCAUAGGGAAACUGGUAGGUCAAGGGGUGUGCAGCAGAGUUGUUGGGAUGAAUGUUAACCAGGUGGAUGUCGUAGC ...((....))..(((((.((.((((.((((((.(((((((((..(((.((....)).............)))..)))))))))))))))))))........((....)))).))))).. ( -38.64) >consensus AGACCAGCAGAAAGAUGAGAUACAUUUCCAGCAGAUUCUGCUGAUCGUACGGAUACUGAAAGGUCAGCGGAUGUGCGGCCGAGUUAUUCGGAUGCACAUUCACCAAAUGGAUGUCAUACU .(((................................((((((((((...(((...)))...))))))))))((((((.(((((...))))).))))))..............)))..... (-20.08 = -20.62 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:36 2006