Locus 5427

Sequence ID 2R_DroMel_CAF1
Location 17,477,976 – 17,478,091
Length 115
Max. P 0.668115
window8657

overview

Window 7

Location 17,477,976 – 17,478,091
Length 115
Sequences 5
Columns 116
Reading direction forward
Mean pairwise identity 85.86
Mean single sequence MFE -24.18
Consensus MFE -19.80
Energy contribution -19.64
Covariance contribution -0.16
Combinations/Pair 1.14
Mean z-score -1.60
Structure conservation index 0.82
SVM decision value 0.28
SVM RNA-class probability 0.668115
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17477976 115 + 20766785
UUA-AUUACUGUUCAUUUUUUAUUAACCAUUGAAACCCAAAUACCCAAACAUGCAGCUACGGCGGGAAGUCCUUUUCUCCUUCGCAGAUGUUUUGGGUGAGUUUUUCCUCCUGCCC
...-...........................((((..(...(((((((((((((.((....))((((((....))))))....)))..)).)))))))).)..))))......... ( -22.40)
>DroSec_CAF1 6186 115 + 1
UUA-AUUAUAAAUCAUUUUCCCUUAACCAUUGAAAACCAAAUACCCAAACAUGCAGCUACGACGGGAAGUCCUUUUCUCCUUCGCAGAUGUUUUGGGUGAGUUUUUCCUUCUGCCC
...-...........................((((((....((((((((...(((.((.(((.((((((....)))).)).))).)).))))))))))).)))))).......... ( -21.90)
>DroSim_CAF1 14749 115 + 1
UUA-AUUAUAAAUCAUUUUCCCUUAACCAUUGAAAACCAAAUACCCAAACAUGCAGCUACGACGGGAAGUCCUUUUCUCCUUCGCAGAUGUUUUGGGUAAGUUUUUCCUCCUGCCC
...-...........................((((((....((((((((...(((.((.(((.((((((....)))).)).))).)).))))))))))).)))))).......... ( -22.20)
>DroEre_CAF1 6239 114 + 1
UUA-CUAAUGAAUUAUUUCAUACUAACCAUGCAAAACGAAAUACCCAAA-AUGCAGCUUCGGCGUGAGGUGCUUUUCUCCUUCGCAGAUGUUUUGGGUGAGUUUUCCCUCUUUCCC
...-...(((((....)))))...........(((((....((((((((-((...((....))((((((..........))))))....)))))))))).)))))........... ( -26.20)
>DroYak_CAF1 14142 115 + 1
UUUUUUAACUAAUCAUUUUAUACUAAUCACUGAAAACCAAAUACCCAAA-UUGCAGCUUCGGCGGGAGGUGCUUUUCUCCUUCGCAGAUGUUUUGGGUGAGUUUUCCCUCUUGCCC
...............................((((((....((((((((-((((.((....))((((((......))))))..))))....)))))))).)))))).......... ( -28.20)
>consensus
UUA_AUUAUAAAUCAUUUUAUAUUAACCAUUGAAAACCAAAUACCCAAACAUGCAGCUACGGCGGGAAGUCCUUUUCUCCUUCGCAGAUGUUUUGGGUGAGUUUUUCCUCCUGCCC
...............................((((((....((((((((...(((.((.(((.((((((....)))).)).))).)).))))))))))).)))))).......... (-19.80 = -19.64 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:32 2006