Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 17,472,757 – 17,472,859 |
Length | 102 |
Max. P | 0.692989 |
Location | 17,472,757 – 17,472,859 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 92.66 |
Mean single sequence MFE | -27.86 |
Consensus MFE | -21.10 |
Energy contribution | -20.18 |
Covariance contribution | -0.92 |
Combinations/Pair | 1.17 |
Mean z-score | -1.87 |
Structure conservation index | 0.76 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.692989 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17472757 102 + 20766785 AAGCGAAAUACAUUUUUCUACA----UAUCUUCCGUUUUAUGCGGUCGAUGUGGGAAGGUGGAUCUUGUGGUCUGAAGUAAUAUUUCUGCUGCUGGAAUUUGUAUU ..(((((...((((((((((((----(.....((((.....))))...)))))))))))))..(((.(..((..(((((...))))).))..).))).)))))... ( -30.30) >DroSec_CAF1 1034 102 + 1 AAGCGAAAUACAUUUUUCUACA----UAUCUUCCGUUUUAUGCGGUCGAUGGGGGAAGGUGGAUCUUGUGGUCUGAAGUAAUAUUUCUGCUGCUGGAAUUUGUAUU ..(((((...(((((((((...----((((..((((.....))))..)))).)))))))))..(((.(..((..(((((...))))).))..).))).)))))... ( -28.30) >DroSim_CAF1 8994 102 + 1 AAGCGAAAUACAUUUUUCUACA----UAUCUUCCGUUUUAUGCGGUCGAUGGGGGAAGGUGGAUCUUGUGGUCUGAAGUAAUAUUUCUGCUGCUGGAAUUUGUAUU ..(((((...(((((((((...----((((..((((.....))))..)))).)))))))))..(((.(..((..(((((...))))).))..).))).)))))... ( -28.30) >DroEre_CAF1 1020 102 + 1 AAGCGAGAUACAUUUUUCUACA----UUUGCUCCGUUUUGCGUGGUCGAGGGGGGAAGGUGGAUCUUGUGGUCUGGAGUAAUAUUUCUGUUGCUGGAAUUUGUAUU ..(((((((.(((((((((...----(((((..((.....))..).))))..))))))))).)))))))..(((..(((((((....))))))))))......... ( -27.40) >DroYak_CAF1 8724 106 + 1 AAACGAAAUACAUUUUUCUACAUACAUAUCUUCCGUUCUAUGUGGUCGAUGGGGGAAGGUGGAUCUUGUGGUCUGAAGUAAUAUUUCUGUUGGUGGAAUUUGUAUU ......((((((...((((((..(((.(((((((..(((((.......))))))))))))(((((....))))).............)))..))))))..)))))) ( -25.00) >consensus AAGCGAAAUACAUUUUUCUACA____UAUCUUCCGUUUUAUGCGGUCGAUGGGGGAAGGUGGAUCUUGUGGUCUGAAGUAAUAUUUCUGCUGCUGGAAUUUGUAUU .((((((((((((((((((.......((((..((((.....))))..)))).)))))))))((((....))))........)))))).)))............... (-21.10 = -20.18 + -0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:25 2006