Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 17,470,500 – 17,470,608 |
Length | 108 |
Max. P | 0.734772 |
Location | 17,470,500 – 17,470,608 |
---|---|
Length | 108 |
Sequences | 3 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 93.57 |
Mean single sequence MFE | -34.40 |
Consensus MFE | -27.77 |
Energy contribution | -28.10 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -2.58 |
Structure conservation index | 0.81 |
SVM decision value | 0.43 |
SVM RNA-class probability | 0.734772 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17470500 108 + 20766785 UUGUGGAGUGGAUUUCAGUUG---CGGACCGAAGGGUCUGG------GCCUGAAUGGGGUCAUUUACUUUGAGUGUUCGACGCUCAUUUAAAUGCAAAUUUAAAUGAAAUUUUAAUC ....(((((((((........---((((((....))))))(------((((.....))))))))))))))(((((.....)))))((((((((....))))))))............ ( -32.70) >DroSim_CAF1 6794 108 + 1 UUGUGGAGUGGAUUUCAGUUG---CGGACCGAAGGGUCUGG------GCCUGAAUGGGGUCAUUUACUUUGAGUGUUCGACGCUCAUUUAAAUGCAAAUUUAAAUGAAAUUUUAAUC ....(((((((((........---((((((....))))))(------((((.....))))))))))))))(((((.....)))))((((((((....))))))))............ ( -32.70) >DroYak_CAF1 6490 117 + 1 UUGUGGAGUGGAUUUCAGUUGGGUCGGUCCAAAGGGUCUGGGCCUGGGCCUGAAUGGGGUCAUUUACUUUGAGUGUUCGACGCUCAUUUAAAUGCAAAUUUAAAUGAAAUUUUAAUC ..(((((...(((..((.(..((((((((((.......))))))..))))..).))..))).)))))...(((((.....)))))((((((((....))))))))............ ( -37.80) >consensus UUGUGGAGUGGAUUUCAGUUG___CGGACCGAAGGGUCUGG______GCCUGAAUGGGGUCAUUUACUUUGAGUGUUCGACGCUCAUUUAAAUGCAAAUUUAAAUGAAAUUUUAAUC .....((..((((((((.......((((((....))))))..........(((((...(.((((((...((((((.....))))))..)))))))..)))))..))))))))...)) (-27.77 = -28.10 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:24 2006