Locus 5421

Sequence ID 2R_DroMel_CAF1
Location 17,470,314 – 17,470,422
Length 108
Max. P 0.572961
window8648

overview

Window 8

Location 17,470,314 – 17,470,422
Length 108
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 87.93
Mean single sequence MFE -22.36
Consensus MFE -20.80
Energy contribution -20.36
Covariance contribution -0.44
Combinations/Pair 1.09
Mean z-score -1.22
Structure conservation index 0.93
SVM decision value 0.08
SVM RNA-class probability 0.572961
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17470314 108 - 20766785
CCUCGUGCACAUGGGCAACAUUAAAAGGGAUUUUUUUUC------------CCUCUUUUUUGCAUUUUUCAACAUUUUAUUGCGAAUGCGACUUCUCGCAGGAGUUGAUUACCUUUGGCA
.....(((.((.((.((((.......((((.......))------------))(((..((((((................))))))(((((....))))))))))))....))..))))) ( -24.29)
>DroSim_CAF1 6608 107 - 1
CCCCGUGCACAUGGGCAACAUUAAAAGGGAUUUUUUUU-------------CUUCUUUUUUGCAUUUUUCAACAUUUUAUUGCGAAUGCGACUUCUCCCAGGAGUUGAUUACCUUUGGCA
.(((((....)))))........(((((..........-------------.......((((((................))))))..(((((((.....)))))))....))))).... ( -21.29)
>DroYak_CAF1 6295 120 - 1
UCCCAUGCACAUGGGCAACAUUAAAAGGGAUUUUAUUUCUUCCUUAUUUUUUUUUUUUUUUGCAUUUUUCAACAUUUUAUUGCGAAUGCGACUUCUCCCAGGAGUUGAUUACCUUUGGCA
.(((((....)))))........(((((..............................((((((................))))))..(((((((.....)))))))....))))).... ( -21.49)
>consensus
CCCCGUGCACAUGGGCAACAUUAAAAGGGAUUUUUUUUC____________CUUCUUUUUUGCAUUUUUCAACAUUUUAUUGCGAAUGCGACUUCUCCCAGGAGUUGAUUACCUUUGGCA
.(((((....)))))........(((((..............................((((((................))))))..(((((((.....)))))))....))))).... (-20.80 = -20.36 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:23 2006