Locus 5420

Sequence ID 2R_DroMel_CAF1
Location 17,469,950 – 17,470,057
Length 107
Max. P 0.976222
window8647

overview

Window 7

Location 17,469,950 – 17,470,057
Length 107
Sequences 3
Columns 107
Reading direction reverse
Mean pairwise identity 96.88
Mean single sequence MFE -32.40
Consensus MFE -29.92
Energy contribution -30.70
Covariance contribution 0.78
Combinations/Pair 1.03
Mean z-score -3.33
Structure conservation index 0.92
SVM decision value 1.77
SVM RNA-class probability 0.976222
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17469950 107 - 20766785
GUACUUUCUGCCUUUUUCAUGUUAAUUAAUAUUGCAGAAACGCUUAAAGGACAUUUUAAUUGGCCUUCACUUUGUGGGCCAAACGAAUUGUUAUUGAGAAAGGCGGA
......(((((((((((((..............((......))......((((.(((..(((((((.(.....).)))))))..))).))))..))))))))))))) ( -33.60)
>DroSim_CAF1 6247 107 - 1
GUACUUUCUGCCUUUUUCAUGUUAAUUAAUAUUGCAGAAACGCUUAAAGGACAUUUUAAUUGGCCUUCACUUUGUGGGCCAAGCGAAUUGUUAUUGAGAAAGGCGGA
......(((((((((((((..............((......))......((((.(((..(((((((.(.....).)))))))..))).))))..))))))))))))) ( -34.90)
>DroYak_CAF1 5926 107 - 1
GUACUUUCUGCCUUUUUCAUGUUAAUUAAUAUUGCAGAAACGCUUAAAGGACAUUUUAAUUGGCCUUCACUUUGUGGGCCAAGCGAAUUGUUAUUGGGCAAGUAGGA
.((((((((((....((.((....)).))....)))))...((((((..((((.(((..(((((((.(.....).)))))))..))).)))).)))))))))))... ( -28.70)
>consensus
GUACUUUCUGCCUUUUUCAUGUUAAUUAAUAUUGCAGAAACGCUUAAAGGACAUUUUAAUUGGCCUUCACUUUGUGGGCCAAGCGAAUUGUUAUUGAGAAAGGCGGA
......(((((((((((((..............((......))......((((.(((..(((((((.(.....).)))))))..))).))))..))))))))))))) (-29.92 = -30.70 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:22 2006