Locus 5417

Sequence ID 2R_DroMel_CAF1
Location 17,467,450 – 17,467,570
Length 120
Max. P 0.586216
window8639

overview

Window 9

Location 17,467,450 – 17,467,570
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 95.00
Mean single sequence MFE -28.40
Consensus MFE -26.27
Energy contribution -27.50
Covariance contribution 1.23
Combinations/Pair 1.05
Mean z-score -1.66
Structure conservation index 0.93
SVM decision value 0.11
SVM RNA-class probability 0.586216
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17467450 120 + 20766785
UGAUUAAUUUAACGUUAUCAAAUUGAUUGGAUUAUUGCUGGGGGAACAGGAACUUGAGCUGUGAUUCAUGAGAGUGCCAUAAAUAACAUGAAAAUGGUAUUUACUUUGGUGCUUAAAAGU
.(((((((((.........)))))))))(((((((.(((.(((.........))).))).)))))))....(((..(((((((((.(((....))).))))))...)))..)))...... ( -30.40)
>DroSim_CAF1 3412 120 + 1
UGAUUAAUUUAGCGUUAUCAAAUUGAUUGGAUUAUUGCUGGGGGAACAGGAACUUGAGCUGUGAUUCAUGAGAGUGCCAUAAAUAACACGAAAAUGGUAUUUACUUUGGUGCUUAAAAAU
.(((((((((.........)))))))))(((((((.(((.(((.........))).))).)))))))....(((..(((((((((.((......)).))))))...)))..)))...... ( -26.70)
>DroYak_CAF1 3573 120 + 1
UGAUUAAUUUGGCGUUAUCAAAUUGAUUGGAUUAUUGCUGGGGGAACAGGAACUUGGGCUGCGAUUCAUGAGAGUGUCAUAAAUAACAUGGAAAUGGUAUUUACUUUGGUGCUUAAAAAC
.(((((((((((.....)))))))))))(((((...(((.(((.........))).)))...)))))....(((..(((((((((.(((....))).))))))...)))..)))...... ( -28.10)
>consensus
UGAUUAAUUUAGCGUUAUCAAAUUGAUUGGAUUAUUGCUGGGGGAACAGGAACUUGAGCUGUGAUUCAUGAGAGUGCCAUAAAUAACAUGAAAAUGGUAUUUACUUUGGUGCUUAAAAAU
.(((((((((.........)))))))))(((((((.(((.(((.........))).))).)))))))....(((..(((((((((.(((....))).))))))...)))..)))...... (-26.27 = -27.50 +   1.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:15 2006