Locus 5416

Sequence ID 2R_DroMel_CAF1
Location 17,466,349 – 17,466,469
Length 120
Max. P 0.562014
window8638

overview

Window 8

Location 17,466,349 – 17,466,469
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 92.78
Mean single sequence MFE -31.90
Consensus MFE -28.31
Energy contribution -27.77
Covariance contribution -0.55
Combinations/Pair 1.17
Mean z-score -1.74
Structure conservation index 0.89
SVM decision value 0.06
SVM RNA-class probability 0.562014
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17466349 120 - 20766785
CAGGACUCCAGAAUAUCAACACAUUGGGACGCCAGGACAUCCAGGAAAAGAAGUCCAGCCAGGGGCGGACUCUGGCAAACAGAGGCAACAUUUUAUUGAUGUUAAUUUAAUGCAGAAGAA
.....................(((((((..(((.((((.((........)).)))).(((((((.....))))))).......)))((((((.....))))))..)))))))........ ( -32.00)
>DroSim_CAF1 2295 120 - 1
CAGGACCCCAGAAUAUCGGCACAUUCAGACACCAGGACAUCCCAGAAAGGAAGUCCAGCCAGGGGCGGACUCUGGCAAACAGAGGCAACAUUUUAUUGAUGUUAAUUUAAUGCAGAAGAA
...............((.(((..........((.((((.(((......))).)))).(((((((.....))))))).......)).((((((.....)))))).......))).)).... ( -31.80)
>DroYak_CAF1 2399 120 - 1
CAGAACUUCAGGAUAUCAGCACAUUCAGACACCAGGACAUCUAGGAAAAGAAGUCCAGCCAGGGGCGGACUCUGGCAAACAGAGGCAACAUUUUAUUGAUGUUAAUUUAAUGCAGAAGAA
.....((((..(....).(((..........((.((((.(((......))).)))).(((((((.....))))))).......)).((((((.....)))))).......))).)))).. ( -31.90)
>consensus
CAGGACUCCAGAAUAUCAGCACAUUCAGACACCAGGACAUCCAGGAAAAGAAGUCCAGCCAGGGGCGGACUCUGGCAAACAGAGGCAACAUUUUAUUGAUGUUAAUUUAAUGCAGAAGAA
...........((((((((...............((((.(((......))).)))).(((((((.....))))))).......(....)......))))))))................. (-28.31 = -27.77 +  -0.55)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:13 2006