Locus 5415

Sequence ID 2R_DroMel_CAF1
Location 17,465,697 – 17,465,811
Length 114
Max. P 0.830141
window8637

overview

Window 7

Location 17,465,697 – 17,465,811
Length 114
Sequences 3
Columns 114
Reading direction reverse
Mean pairwise identity 99.42
Mean single sequence MFE -28.47
Consensus MFE -27.90
Energy contribution -27.90
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.87
Structure conservation index 0.98
SVM decision value 0.71
SVM RNA-class probability 0.830141
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17465697 114 - 20766785
GCUGGAACAAUUCAAUAAUAUUUAUAGCAUCGUCUCAUUCUGGAAAUGUCCGCGGCAACAUAUGCAAGUGGAUAUUGCUCUAUUUUCAAGUGGGAUUCCAUUAUAAUAUUGUUG
............((((((((((.((((....((((((((.(((((((((((((.(((.....)))..))))))))........)))))))))))))....)))))))))))))) ( -27.90)
>DroSim_CAF1 1688 114 - 1
GCUGGAACAAUUCAAUAAUAUUUAUAGCGUCGUCUCAUUCUGGAAAUGUCCGCGGCAACAUAUGCAAGUGGAUAUUGCUCUAUUUUCAAGUGGGAUUCCAUUAUAAUAUUGUUG
............((((((((((.((((.(..((((((((.(((((((((((((.(((.....)))..))))))))........)))))))))))))..).)))))))))))))) ( -29.60)
>DroYak_CAF1 1775 114 - 1
GCUGGAACAAUUCAAUAAUAUUUAUAGCAUCGUCUCAUUCUGGAAAUGUCCGCGGCAACAUAUGCAAGUGGAUAUUGCUCUAUUUUCAAGUGGGAUUCCAUUAUAAUAUUGUUG
............((((((((((.((((....((((((((.(((((((((((((.(((.....)))..))))))))........)))))))))))))....)))))))))))))) ( -27.90)
>consensus
GCUGGAACAAUUCAAUAAUAUUUAUAGCAUCGUCUCAUUCUGGAAAUGUCCGCGGCAACAUAUGCAAGUGGAUAUUGCUCUAUUUUCAAGUGGGAUUCCAUUAUAAUAUUGUUG
............((((((((((.((((....((((((((.(((((((((((((.(((.....)))..))))))))........)))))))))))))....)))))))))))))) (-27.90 = -27.90 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:12 2006