Locus 5414

Sequence ID 2R_DroMel_CAF1
Location 17,465,477 – 17,465,589
Length 112
Max. P 0.752581
window8636

overview

Window 6

Location 17,465,477 – 17,465,589
Length 112
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 89.20
Mean single sequence MFE -39.37
Consensus MFE -32.79
Energy contribution -33.13
Covariance contribution 0.34
Combinations/Pair 1.08
Mean z-score -2.18
Structure conservation index 0.83
SVM decision value 0.48
SVM RNA-class probability 0.752581
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17465477 112 + 20766785
UAAAUGUUUGGUCAUGUGUGGAUUUCGAUUUCGGAUCAAAUAG--------CUGAGUAGGAGGUGUCUGCGAAAGUAUCUUUGCCUUCGAAAUGCGGCUCUGUCUGCCCGCACAUGCCAA
.......((((.((((((((((((((...(((((.........--------)))))..(((((((..(((....)))....))))))))))))((((......))))))))))))))))) ( -38.70)
>DroSim_CAF1 1470 111 + 1
UAAAUGUUUGGUCAUGUGUGGAUUUCGAUUUCGGAUCAAAUAG--------CUGAGUGGGAG-UAAGUGCGAAAGUAUCUUUGCCUUCGAAAUGCGGCUCUGUCUGCCCGCACAUGCCAA
.......((((.((((((((((((((((.(((((.........--------))))).(((..-.((((((....))).)))..))))))))))((((......))))))))))))))))) ( -38.60)
>DroYak_CAF1 1536 120 + 1
UAAAUGUUUGGUCAUGUGUGGAUUUCGAUUUCGGCUCAAAUGGCUGCCUGGCUGAGUGGGAGGUGUCUGCGAAAGUAUCUUUGCCUUCGGAUUGUGGCUCUGUCUGGCCGCACAUGCCAA
.......((((.(((((((((..........(((((.....)))))((.(((.((((.(((((((..(((....)))....)))))))........)))).))).))))))))))))))) ( -40.80)
>consensus
UAAAUGUUUGGUCAUGUGUGGAUUUCGAUUUCGGAUCAAAUAG________CUGAGUGGGAGGUGUCUGCGAAAGUAUCUUUGCCUUCGAAAUGCGGCUCUGUCUGCCCGCACAUGCCAA
.......((((.((((((((((((((...(((((.................)))))..(((((((..(((....)))....))))))))))))((((......))))))))))))))))) (-32.79 = -33.13 +   0.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:11 2006