Locus 5411

Sequence ID 2R_DroMel_CAF1
Location 17,462,974 – 17,463,068
Length 94
Max. P 0.723297
window8631

overview

Window 1

Location 17,462,974 – 17,463,068
Length 94
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 74.70
Mean single sequence MFE -20.64
Consensus MFE -3.26
Energy contribution -4.06
Covariance contribution 0.80
Combinations/Pair 1.00
Mean z-score -1.62
Structure conservation index 0.16
SVM decision value 0.41
SVM RNA-class probability 0.723297
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17462974 94 - 20766785
AAUCAGCGCACAAAAUACAGUCAUUAUAAUCAA--CGA---------CCUCUUG----GUACAGUAAACAGCUCCCUAUAACGAACCCAG-----------GCGCACACGUGCGCACACU
.....((((((.....................(--(.(---------((....)----))...)).....((.((..............)-----------).))....))))))..... ( -18.94)
>DroPse_CAF1 9424 103 - 1
AAUCAGGGCACAAAAUACAGUCAUUAUACUUGAAACCGGCACCCACUCUGCUUGGGGUGUACAGUAAACACCCCCGAAUAAUGCACCC-----------------ACACGUGCACACACU
...(((((............(((.......)))............)))))...(((((((.......))))))).......(((((..-----------------....)))))...... ( -22.35)
>DroPer_CAF1 9443 103 - 1
AAUCAGGGCACAAAAUACAGUCAUUAUACUUGAAACCGGCACCCACUCUGCUUGGGGUGUACAGUAAACACCCCCGAAUAAUGCACCC-----------------ACACGUGCGCACACU
.....(.((((........((((((((..........((((.......)))).(((((((.......)))))))...)))))).))..-----------------....)))).)..... ( -24.24)
>DroEre_CAF1 10586 94 - 1
AAUCAGCACACAAAAUACAGUCAUUAUAAUCAA--CGA---------GCUCUUG----GUACAGUAAACAGCGCCCCAUAACGAACCCAC-----------GCGCACACGUGCGCACACU
.....((.(((.................(((((--.(.---------...))))----))..........((((................-----------))))....))).))..... ( -13.59)
>DroYak_CAF1 11141 105 - 1
AAUCAGCACACAAAAUACAGUCAUUAUAAUCAA--CGA---------CCGCUUG----GUACAGUAAACAGCCCCCUAUAACGAACCCAUGGGUUCGUGAUGCGCACACGUGCGCACACU
................................(--(.(---------((....)----))...)).................(((((....)))))(((.((((((....))))))))). ( -24.10)
>consensus
AAUCAGCGCACAAAAUACAGUCAUUAUAAUCAA__CGA_________CCGCUUG____GUACAGUAAACAGCCCCCAAUAACGAACCCA____________GCGCACACGUGCGCACACU
.....((((((..(((......))).................................((.......))........................................))))))..... ( -3.26 =  -4.06 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:07 2006