Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 17,462,840 – 17,462,944 |
Length | 104 |
Max. P | 0.797424 |
Location | 17,462,840 – 17,462,944 |
---|---|
Length | 104 |
Sequences | 3 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 78.93 |
Mean single sequence MFE | -31.70 |
Consensus MFE | -20.71 |
Energy contribution | -20.05 |
Covariance contribution | -0.66 |
Combinations/Pair | 1.21 |
Mean z-score | -1.85 |
Structure conservation index | 0.65 |
SVM decision value | 0.61 |
SVM RNA-class probability | 0.797424 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17462840 104 - 20766785 UUUAAAGCUCGCAUCACAUUCAAAUUAUGAUAAUGAUGGCGUGAGGCGAGGGUGUGUUUUUUGCAUAUGAGUUAAAGUGG-------------GGGUGUUUCGCAGAGUGGGUGUUU ......(((((((.(((((((..(((((....)))))(.(....).)..))))))).....)))............(((.-------------.(...)..))).))))........ ( -23.40) >DroEre_CAF1 10454 101 - 1 UUUAAAGCCCGCAUCACACGCAAAUUAUGAUAAUGAUGGCGUGAGGCGAGGGUGUGUUU-CUGCAUAUGAGUCCAAGUGG---------------GGGUUCCACAGAGUGGGUGUAU ......((((((.((.(((((..(((((....))))).))))).(((....((((((..-..))))))..)))...((((---------------.....)))).)))))))).... ( -31.70) >DroYak_CAF1 10995 116 - 1 UUUAAAGCCCGCAUCACACUUAAAUUAUGAUAAUGAUGGCGAGAGUCGUGAGUGUGUUU-UUGCAUAUGAGCCAAAGUGUGUGCGAGUGUGUGGAGUGUUCCACAGAUGGGGUGUAU ......(((((((.(((((((..(((((....)))))(((....)))((..((((((..-..))))))..))..))))))))))..((.(((((......))))).)).)))).... ( -40.00) >consensus UUUAAAGCCCGCAUCACACUCAAAUUAUGAUAAUGAUGGCGUGAGGCGAGGGUGUGUUU_UUGCAUAUGAGUCAAAGUGG_____________G_GUGUUCCACAGAGUGGGUGUAU ......(((((((.(((((((..(((((....)))))(.(....).)..))))))).....)))............(((......................))).....)))).... (-20.71 = -20.05 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:06 2006