| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 2,853,134 – 2,853,237 |
| Length | 103 |
| Max. P | 0.602021 |
| Location | 2,853,134 – 2,853,237 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 79.94 |
| Mean single sequence MFE | -35.45 |
| Consensus MFE | -21.91 |
| Energy contribution | -21.38 |
| Covariance contribution | -0.52 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.602021 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2853134 103 - 20766785 AUUGAUAUUGUCCGGGAUCAUCACGCUGGCAACUACACUUGUGUGGCAGUCAACCGGGCCACCUCCGUUAACUUUACCGCCGAACUGGUGGUGAAUGGUAC--------UU .........(((((((((..((((((.((........)).))))))..)))..)))))).....((((.....((((((((.....))))))))))))...--------.. ( -31.20) >DroVir_CAF1 4177 111 - 1 AUUGACUUUGUGCGCGAUCAUCACGCGGGCAACUACACCUGCGUGGCCGUCAAUAGGGCCACUUCAGUGAACUACACCGCCGAGCUGGUGGUGAAUGGUACAGAAAGCCUU ......(((((((.......(((((((((........)))))((((((........))))))....))))....(((((((.....)))))))....)))))))....... ( -43.20) >DroPse_CAF1 4529 103 - 1 AUUGACUUUGUCCGCGACCAGCAUGCGGGCAACUACACCUGUGUGGCCGUCAACCGUGCCACAUCGGCCAACCUUACCGCCCAGCUGGUGGUGAAUGGUAC--------UA .(((((.(((((((((.......)))))))))(((((....)))))..)))))..((((((....((....))((((((((.....)))))))).))))))--------.. ( -39.80) >DroEre_CAF1 4704 103 - 1 AUUGACAUUGUCCGGGAUCACCACGCUGGCAAUUAUACGUGUGUGGCAGUCAACCGUGCCACAUCCGUUAACUUUACCGCCGAACUGGUGGUGAAUGGUAC--------UU .(((((((((((((((....)).))..)))))).....(..(((((((........)))))))..)))))).(((((((((.....)))))))))......--------.. ( -32.90) >DroAna_CAF1 4728 103 - 1 AUAGACAUUGUCAGAGACCACCAUGCCGGGAAUUAUACUUGUGUGGCUGUCAAUCGCGCGACUUCGGUUAACUACACGGCUGAAUUAGUUGUGAAUGGUAU--------UG .....((((......(((..((((((.((........)).))))))..))).....(((((((((((((........))))))...)))))))))))....--------.. ( -25.60) >DroPer_CAF1 4527 103 - 1 AUUGACUUUGUCCGCGACCAGCAUGCGGGCAACUACACCUGUGUGGCCGUCAACCGUGCCACAUCGGCCAACUUUACCGCCCAGCUGGUGGUGAAUGGUAC--------UA .......(((((((((.......))))))))).....((.(((((((((.....)).))))))).))(((..(((((((((.....))))))))))))...--------.. ( -40.00) >consensus AUUGACAUUGUCCGCGACCACCACGCGGGCAACUACACCUGUGUGGCCGUCAACCGUGCCACAUCGGUUAACUUUACCGCCGAACUGGUGGUGAAUGGUAC________UU ...............(((..((((((.((........)).))))))..)))......((((...........(((((((((.....)))))))))))))............ (-21.91 = -21.38 + -0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:17 2006