| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 17,457,286 – 17,457,427 |
| Length | 141 |
| Max. P | 0.957809 |
| Location | 17,457,286 – 17,457,394 |
|---|---|
| Length | 108 |
| Sequences | 3 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 97.52 |
| Mean single sequence MFE | -25.53 |
| Consensus MFE | -24.57 |
| Energy contribution | -24.57 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.96 |
| SVM decision value | 0.88 |
| SVM RNA-class probability | 0.873930 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17457286 108 - 20766785 GAUGAAAGCCCUAAACAGGAGCAAAAAAGGAUACAGAAGCGAAAAAAGAGGAAUCGCUACAUGCCUUUGUAAGGGGGUGUAAACAGCAGAAGCAAUCCUUUUUUUUUC ...(((((((((....))).))((((((((((......((((...........))))(((((.((((....)))).)))))....((....)).)))))))))))))) ( -27.40) >DroSec_CAF1 171936 106 - 1 GAUGAAAGCCCUAAACAGGAGCAAAAAAGGAUACAGAAGCGAAAAAAGAGGAAUCGCUACAUGCCUUUGUAAGGGGGUGUAAACAGCAGAAGCAAGCCUUUUUUUU-- .......(((((....))).))((((((((........((((...........))))(((((.((((....)))).)))))....((....))...))))))))..-- ( -24.60) >DroSim_CAF1 176935 106 - 1 GACGAAAGCCCUAAACAGGAGCAAAAAAGGAUACAGAAGCGAAAAAAGAGGAAUCGCUACAUGCCUUUGUAAGGGGGUGUAAACAGCAGAAGCAAGCCUUUUUUUU-- .......(((((....))).))((((((((........((((...........))))(((((.((((....)))).)))))....((....))...))))))))..-- ( -24.60) >consensus GAUGAAAGCCCUAAACAGGAGCAAAAAAGGAUACAGAAGCGAAAAAAGAGGAAUCGCUACAUGCCUUUGUAAGGGGGUGUAAACAGCAGAAGCAAGCCUUUUUUUU__ .......(((((....))).))((((((((........((((...........))))(((((.((((....)))).)))))....((....))...)))))))).... (-24.57 = -24.57 + -0.00)
| Location | 17,457,316 – 17,457,427 |
|---|---|
| Length | 111 |
| Sequences | 3 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 98.80 |
| Mean single sequence MFE | -33.93 |
| Consensus MFE | -33.85 |
| Energy contribution | -33.97 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.30 |
| Structure conservation index | 1.00 |
| SVM decision value | 1.48 |
| SVM RNA-class probability | 0.957809 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17457316 111 - 20766785 CGCACAUGUGGCGCGCUUUGGUUUCGGUGGGGGGAUGAAAGCCCUAAACAGGAGCAAAAAAGGAUACAGAAGCGAAAAAAGAGGAAUCGCUACAUGCCUUUGUAAGGGGGU ....((((((((.((((((.(((((.((..((((.(....)))))..)).)))))......(....).))))))......((....))))))))))((((.....)))).. ( -33.80) >DroSec_CAF1 171964 111 - 1 CGCACAUGUGGCGCGCUUUGGUUACGGUGGGGGGAUGAAAGCCCUAAACAGGAGCAAAAAAGGAUACAGAAGCGAAAAAAGAGGAAUCGCUACAUGCCUUUGUAAGGGGGU ....((((((((.((((((.(((...((..((((.(....)))))..))...)))......(....).))))))......((....))))))))))((((.....)))).. ( -30.90) >DroSim_CAF1 176963 111 - 1 CGCACAUGUGGCGCGCUUUGGUUUCGGUGGGGGGACGAAAGCCCUAAACAGGAGCAAAAAAGGAUACAGAAGCGAAAAAAGAGGAAUCGCUACAUGCCUUUGUAAGGGGGU ....((((((((.((((((.(((((.((..((((.(....)))))..)).)))))......(....).))))))......((....))))))))))((((.....)))).. ( -37.10) >consensus CGCACAUGUGGCGCGCUUUGGUUUCGGUGGGGGGAUGAAAGCCCUAAACAGGAGCAAAAAAGGAUACAGAAGCGAAAAAAGAGGAAUCGCUACAUGCCUUUGUAAGGGGGU ....((((((((.((((((.(((((.((..((((.(....)))))..)).)))))......(....).))))))......((....))))))))))((((.....)))).. (-33.85 = -33.97 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:05 2006