Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 17,457,084 – 17,457,259 |
Length | 175 |
Max. P | 0.979267 |
Location | 17,457,084 – 17,457,181 |
---|---|
Length | 97 |
Sequences | 3 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 95.85 |
Mean single sequence MFE | -26.83 |
Consensus MFE | -21.73 |
Energy contribution | -22.07 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -3.00 |
Structure conservation index | 0.81 |
SVM decision value | 0.59 |
SVM RNA-class probability | 0.790884 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17457084 97 + 20766785 ACACAAAGCCCGAGGAGGAGUCUGCUACCGCGAUACACAUGCAAAUUUGUGUACAAACUGAAUCAAUUUUUACCGCGAUAAACUUCGGCUCCACCUU ...........((((.((((((.......(((.((((((........)))))).....((((......)))).)))((......)))))))).)))) ( -24.20) >DroSec_CAF1 171736 95 + 1 ACUCAAAGCCCGAGGUGGAGUCUGCUACCCCGAUACACAUGCAAAU--GUGUACAAGCUGAAUCAAUUUUUACCGCGAUAAACUUCGGCUCCACCUU ...........(((((((((((.((......(.(((((((....))--))))))..(.((((......)))).)))((......))))))))))))) ( -28.50) >DroSim_CAF1 176735 95 + 1 ACACAAAGCCCGAGGUGGAGUCUGCUACCCCGAUACACAUGCAAAU--GUGUACAAACUGAAUCAAUUUUUACCGCGAUAAACUUCGGCUCCACCUU ...........(((((((((((.((......(.(((((((....))--))))))....((((......))))..))((......))))))))))))) ( -27.80) >consensus ACACAAAGCCCGAGGUGGAGUCUGCUACCCCGAUACACAUGCAAAU__GUGUACAAACUGAAUCAAUUUUUACCGCGAUAAACUUCGGCUCCACCUU ...........(((((((((((.((......(.(((((..........))))))....((((......))))..))((......))))))))))))) (-21.73 = -22.07 + 0.33)
Location | 17,457,152 – 17,457,259 |
---|---|
Length | 107 |
Sequences | 3 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 99.38 |
Mean single sequence MFE | -29.82 |
Consensus MFE | -29.62 |
Energy contribution | -29.62 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.68 |
Structure conservation index | 0.99 |
SVM decision value | 1.83 |
SVM RNA-class probability | 0.979267 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17457152 107 - 20766785 AUUUGCAAAUUUUACACAACAUUUUGCAGUUACCUCAGUGCCGUAAAAUCCGGUGCUCUCUCCACUUUUCCACCGCAAAAGGUGGAGCCGAAGUUUAUCGCGGUAAA ..(((((((.............)))))))(((((.(((..(((.......)))..))......(((((((((((......))))))...))))).....).))))). ( -30.22) >DroSec_CAF1 171802 107 - 1 AUUUGCAAAUUUUACACAACAUUUUGCAGUUACCUCAGUGCCGUAAAAUCCGGUGCUCUCUCCACUUUUCCCCCGCAAAAGGUGGAGCCGAAGUUUAUCGCGGUAAA ..(((((((.............)))))))(((((.(((..(((.......)))..))..((((((((((........))))))))))............).))))). ( -29.62) >DroSim_CAF1 176801 107 - 1 AUUUGCAAAUUUUACACAACAUUUUGCAGUUACCUCAGUGCCGUAAAAUCCGGUGCUCUCUCCACUUUUCCCCCGCAAAAGGUGGAGCCGAAGUUUAUCGCGGUAAA ..(((((((.............)))))))(((((.(((..(((.......)))..))..((((((((((........))))))))))............).))))). ( -29.62) >consensus AUUUGCAAAUUUUACACAACAUUUUGCAGUUACCUCAGUGCCGUAAAAUCCGGUGCUCUCUCCACUUUUCCCCCGCAAAAGGUGGAGCCGAAGUUUAUCGCGGUAAA ..(((((((.............)))))))(((((.(((..(((.......)))..))..((((((((((........))))))))))............).))))). (-29.62 = -29.62 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:03 2006