Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 17,451,646 – 17,451,749 |
Length | 103 |
Max. P | 0.654806 |
Location | 17,451,646 – 17,451,749 |
---|---|
Length | 103 |
Sequences | 6 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 81.25 |
Mean single sequence MFE | -41.17 |
Consensus MFE | -23.23 |
Energy contribution | -23.70 |
Covariance contribution | 0.47 |
Combinations/Pair | 1.19 |
Mean z-score | -2.18 |
Structure conservation index | 0.56 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.654806 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17451646 103 - 20766785 AUGGGACUGCAGUGGCAUGGCCUGAUGGUAGUGAUGGUGGGCCUGCAGGGUUUGUGCAUGAUGCGGAUAAUUGAGGGUCAUGCCCAAUCCAUUAACAUGAUUA (((...(((((..(((.(.((((.((....)).).))).)))))))))((.(((.(((((((.(..........).))))))).))).)).....)))..... ( -31.00) >DroVir_CAF1 187966 100 - 1 AUGCGCUUGCAGUGGCAUCGCCUGAUGAUAGUGAUGAUGCGCCUGGAGCGUUUGGGCAUGAUGCGGAUAGUUUAGCGCCAUGCCCAAGCCACCAGCCCCG--- ..((((...((.((.((((....)))).)).)).....))))((((.(.(((((((((((.(((..........))).)))))))))))).)))).....--- ( -40.10) >DroGri_CAF1 183506 100 - 1 UUGCGAUUGCAGCGGCAUUGCCUGGUGGUAAUGAUGAUGCGCCUGCAACGUUUGCGCAUGAUGUGGAUAGUUGAGGGGCAUGCCCAUGCCACCCACACCG--- ..(((((.((....)))))))..(((((((.((...((((.(((.(((((((..((.....))..))).))))))).))))...))))))))).......--- ( -35.00) >DroEre_CAF1 165287 103 - 1 AUGGGACUGCAGCGGCAUGGCCUGAUGGUAGUGGUGGUGCGCCUGCAGGGUUUGGGCAUGAUGCGGAUAGUUGAGGGUCAUGCCCAAGCCGUUGACAUGGUUG (((...((((((.(((((.(((..........))).)))).)))))))((((((((((((((.(..........).)))))))))))))).....)))..... ( -48.70) >DroYak_CAF1 151629 103 - 1 AUGGGACUGCAGUGGCAUGGCCUGAUGGUAGUGGUGGUGCGCCUGCAGGGUUUGGGCAUGAUGCGGAUAGUUGAGGGUCAUGCCCAAGCCGUUGACAUGGUUA (((...((((((..((((.(((..........))).))))..))))))((((((((((((((.(..........).)))))))))))))).....)))..... ( -49.20) >DroMoj_CAF1 231895 100 - 1 GUGGCCCUGCAGCGGCAUGGCCUGAUGGUAGUGAUGAUGCGCCUGCAGCGUUUGCGCAUGAUGCGGAUAGUUGAGCGUCAUGCCGAGGCCACCGGGCCCC--- ..(((((.(((.((.(((.(((....))).))).)).)))((((((((...))))(((((((((..........)))))))))..))))....)))))..--- ( -43.00) >consensus AUGGGACUGCAGCGGCAUGGCCUGAUGGUAGUGAUGAUGCGCCUGCAGCGUUUGGGCAUGAUGCGGAUAGUUGAGGGUCAUGCCCAAGCCACCGACACCG___ ......((((((..((((.(((....))).......))))..)))))).(((((.(((((((.(..........).))))))).))))).............. (-23.23 = -23.70 + 0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:01 2006