Locus 5406

Sequence ID	2R_DroMel_CAF1
Location	17,450,582 – 17,450,673
Length	91
Max. P	0.524806

overview

Window 4

Location	17,450,582 – 17,450,673
Length	91
Sequences	5
Columns	92
Reading direction	forward
Mean pairwise identity	82.15
Mean single sequence MFE	-16.89
Consensus MFE	-11.34
Energy contribution	-11.58
Covariance contribution	0.24
Combinations/Pair	1.08
Mean z-score	-1.61
Structure conservation index	0.67
SVM decision value	-0.02
SVM RNA-class probability	0.524806
Prediction	RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17450582 91 + 20766785
GCAAAAUAAUAAAAAA-GAUAGAACGAAUGGCGGAGAGAGAUAGUCAGUCGGCUAAUUAAAGCCAUCACUGCAGGAAAAUUUCAAACGCAUU
((..............-.............((((.((..(((.....)))((((......)))).)).)))).(((....)))....))... ( -15.00)
>DroSec_CAF1 163943 79 + 1
NNNNNNNNNUAAAAAA-GAUAGAACGAAUGGCGUAGAGAGAUAGUCAGUCGGCUAAUUAAAGCCAUCACUGCGGAAAAA------------U
................-..............(((((.(((((.....)))((((......)))).)).)))))......------------. ( -14.00)
>DroSim_CAF1 170201 79 + 1
GCAAAAUAAUAAAAAA-GAUAGAACGAAUGGCGUAGAGAGAUAGUCAGUCGGCUAAUUAAAGCCAUCACUGCGGAAAAA------------U
................-..............(((((.(((((.....)))((((......)))).)).)))))......------------. ( -14.00)
>DroEre_CAF1 164122 91 + 1
GCAAAAUAAUAAAAAA-GAAAGUGCGAAUGGCGGAGAGAGAUAGUCAGUCGGCUAAUUAAAGCCAUCACUGUGGGAAAACUGCGACUGCCUU
(((.............-.....)))....(((((((.(((((.....)))((((......)))).)).))(..(.....)..)..))))).. ( -18.87)
>DroYak_CAF1 150488 92 + 1
GCAAAAUAAUAAAAAAUGAUAGUACGAAUGGCGGAGAGAGAUAGUCAGUCGGCUAAUUAAAGCCAUCACUGCGGGAAAACUGCGGCCGCUUU
.............................(((((...(((((.....)))((((......)))).)).((((((.....))))))))))).. ( -22.60)
>consensus
GCAAAAUAAUAAAAAA_GAUAGAACGAAUGGCGGAGAGAGAUAGUCAGUCGGCUAAUUAAAGCCAUCACUGCGGGAAAA_U_C____GC_UU
..............................((((.((..(((.....)))((((......)))).)).)))).................... (-11.34 = -11.58 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:00 2006