Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 17,446,911 – 17,447,022 |
Length | 111 |
Max. P | 0.969020 |
Location | 17,446,911 – 17,447,022 |
---|---|
Length | 111 |
Sequences | 3 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 63.58 |
Mean single sequence MFE | -27.03 |
Consensus MFE | -15.61 |
Energy contribution | -15.85 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.38 |
Mean z-score | -1.54 |
Structure conservation index | 0.58 |
SVM decision value | 1.64 |
SVM RNA-class probability | 0.969020 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17446911 111 - 20766785 GGCAGCAUUCGCU---ACACCUGUAUACAGGUGAAUGCUAUGAAGGGCAAAAAAGGUGGCGGGGAGGGACAACUUAAUUA---GUGCUUUUAAGUGAUUAUGCUUAAAUGAAAAACA ...((((((((((---(((((((....)))))...((((......))))......))))))).(((......))).....---)))))(((((((......)))))))......... ( -29.50) >DroSim_CAF1 166491 112 - 1 GACAGCAUUCGCU---ACACCUGUAUACAGGUGAAAGCUAUGAAGGGCAA--AAGGUGGCGGGGACCUACAACUUAAUUAGCAGUGCUUUUAAGUGAUUCUGUUUAAAUGAAAAACA (((((...(((((---.((((((....))))))...((((..(((.....--...((((.(....)))))..)))...))))..........)))))..)))))............. ( -30.10) >DroAna_CAF1 146500 104 - 1 GGUAGCAACAGCUCGAAAGCUUGGCUACAGGUGAAAAA--UUAAAAUU----AAAAUGGCCAGAGGAGUCAUCUCAAUUAGCUUUCUCCUUAAAGGAU-AUGCUUGAUAGU------ ...((((.......(((((((((((((....(((....--......))----)...))))))...(((....)))....)))))))(((.....))).-.)))).......------ ( -21.50) >consensus GGCAGCAUUCGCU___ACACCUGUAUACAGGUGAAAGCUAUGAAGGGCAA__AAGGUGGCGGGGAGAGACAACUUAAUUAGC_GUGCUUUUAAGUGAUUAUGCUUAAAUGAAAAACA ...((((.(((((....((((((....))))))...(((......))).........)))))((((((((.............)))))))).........))))............. (-15.61 = -15.85 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:53 2006