Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,852,213 – 2,852,309 |
Length | 96 |
Max. P | 0.782934 |
Location | 2,852,213 – 2,852,309 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 78.69 |
Mean single sequence MFE | -22.62 |
Consensus MFE | -15.80 |
Energy contribution | -15.63 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.30 |
Mean z-score | -1.44 |
Structure conservation index | 0.70 |
SVM decision value | 0.56 |
SVM RNA-class probability | 0.782934 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2852213 96 + 20766785 CGGGCUCUUCGCCGAAACUGAAGGGAGUGAUCUUGGGUGGAGCUUGUUAAGAGGAAUGAGGGAAUAGGUAAAAUAAAAGUCCGAUAUUCAAAAAAA (((((((((((((.(((((......)))....)).)))))))((..((......))..)).................))))))............. ( -19.90) >DroSec_CAF1 3868 92 + 1 CGGGCUCCUCGCCAAAGCUGAACGGAGUGAUCUUGGGUGGAGCUUGUUAAGAGGAGGGAGGGAAUAGGGAAAAUAAAAGUCCGAUAUUCAAA---- ....((((((....(((((..(((((....)))...))..))))).....)))))).....(((((.(((.........)))..)))))...---- ( -25.20) >DroSim_CAF1 3745 92 + 1 CGGGCUCUUCGCCAAAGCUGAACGGAGUGAUCUUGGGUGGAGCUUGUUAAGAGGAGGGAGGGAAUAGGGAAAAUAAAAGUCCAAAAUUCAAA---- ....((((((....(((((..(((((....)))...))..))))).....)))))).....((((..(((.........)))...))))...---- ( -20.90) >DroEre_CAF1 3821 85 + 1 CGGGCUCUUCACCAAAGCUGAAGGGAGUGAUCUUGGGUGGAGCUUG---AGAG---GGUG-GGAUAGGGAAAACAAAAGUCCGAACUUCAAA---- ((((((((...((((.(((......)))....))))..))))))))---.(((---(.(.-((((..(.....)....)))).).))))...---- ( -24.70) >DroYak_CAF1 3841 85 + 1 CGGGCUCCUCACCAAAGCUGAAGGGAGUGAUCUUGGGUGGAGCUUGUUAAGAU---GGCG-GGAUUGGGAAA---AAAGUUCGAAAUUCAAA---- ((((((((.(.((((.(((......)))....))))).)))))))).......---....-(((((..(((.---....)))..)))))...---- ( -22.00) >DroAna_CAF1 3841 81 + 1 CCGGCUCUUCGCCAAAGCUGAAGGGUGUGAUCUUGGGCGGAGCUUGG-----GUAGGGAUGGU-UGUGGUUAAAAAAAGGC-----UACAGA---- ((.(((((((((....)).))))))).....((..(((...)))..)-----)..)).....(-(((((((.......)))-----))))).---- ( -23.00) >consensus CGGGCUCUUCGCCAAAGCUGAAGGGAGUGAUCUUGGGUGGAGCUUGUUAAGAGGAGGGAGGGAAUAGGGAAAAUAAAAGUCCGAAAUUCAAA____ ((((((((.(.((((.(((......)))....))))).))))))))...............((((..(((.........)))...))))....... (-15.80 = -15.63 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:15 2006