| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 17,438,940 – 17,439,049 |
| Length | 109 |
| Max. P | 0.695465 |
| Location | 17,438,940 – 17,439,049 |
|---|---|
| Length | 109 |
| Sequences | 5 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 94.50 |
| Mean single sequence MFE | -29.15 |
| Consensus MFE | -25.00 |
| Energy contribution | -26.08 |
| Covariance contribution | 1.08 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.35 |
| Structure conservation index | 0.86 |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.695465 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17438940 109 + 20766785 UUUCACGCCGAGUCCUUCGACUUUAAAUUGACCAAACCAUAUCAUUAGGACACACAUUUUGUGUGCAAGCCUGCAAGAGGUGCGCAACUUUCAGCUGAGUUGUGCAAAU ......((((((((....)))))......................((((.(((((.....)))))....)))).....)))(((((((((......))))))))).... ( -29.00) >DroSec_CAF1 154608 109 + 1 UUUCAAGCCGAGUCCUUCGACUUUAAAUUGACCAGACCAUAUCAUUAGGACACACAUUUUGUGUGCGAGCCUGCCAGAGGUGCGCAACUUUCAGCUGAGUUGUGCAUAU ..((((...(((((....)))))....))))..............((((.(((((.....)))))....))))......(((((((((((......))))))))))).. ( -30.50) >DroSim_CAF1 158684 109 + 1 UUUCAAGCCGAGUCCUUCGACUUUAAAUUGACCAGACCAUAUCAUUAGGACACACAUUUUGUGUGCGAGCCUGCCAGAGGUGCGCAACUUUCAGCUGAGUUGUGCAAAU ..((((...(((((....)))))....))))....(((...((..((((.(((((.....)))))....))))...)))))(((((((((......))))))))).... ( -29.70) >DroEre_CAF1 154584 109 + 1 UUUCAAGCCGAGUCCUUCGGCUUUAAAUUGACCAAACCAUAUCAUUAGGACUCACAUUUUGUGUUCCAGCCUGCCGGAGGUGCGCAACUUUCAGCUGAGUUGUGCAAAU .............((((((((.......(((..........)))...(((..(((.....))).))).....))))))))((((((((((......))))))))))... ( -32.90) >DroYak_CAF1 138801 109 + 1 UUUCAAGUCGAGUCCUGCGUCUUUAAAUUGACCAAACCAUAUCAUUAGGACACACAUUUUGUAUGCGAGCCAGCCAGAGGUGCGCAACUUUCAGCUGAGUUGUGCAAAU .......(((.((((((.(((........))).............))))))(((.....)))...)))(((.......)))(((((((((......))))))))).... ( -23.64) >consensus UUUCAAGCCGAGUCCUUCGACUUUAAAUUGACCAAACCAUAUCAUUAGGACACACAUUUUGUGUGCGAGCCUGCCAGAGGUGCGCAACUUUCAGCUGAGUUGUGCAAAU ..((((...(((((....)))))....))))....(((...((..((((.(((((.....)))))....))))...)))))(((((((((......))))))))).... (-25.00 = -26.08 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:51 2006