Locus 5398

Sequence ID 2R_DroMel_CAF1
Location 17,436,877 – 17,436,973
Length 96
Max. P 0.781547
window8613

overview

Window 3

Location 17,436,877 – 17,436,973
Length 96
Sequences 3
Columns 96
Reading direction reverse
Mean pairwise identity 84.03
Mean single sequence MFE -21.96
Consensus MFE -15.56
Energy contribution -15.78
Covariance contribution 0.23
Combinations/Pair 1.09
Mean z-score -2.20
Structure conservation index 0.71
SVM decision value 0.56
SVM RNA-class probability 0.781547
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17436877 96 - 20766785
GAGGAAGGAGAAAGAUGUGUUACAUAUUUUGAAGCAGUUGCCAAAUGUAUUCUUUGGUAAAUAAUUUUGUUAGGUAGCACUUAGAAUAUCGUUCCA
..((((.((.......(((((((.......(((....((((((((.......))))))))....)))......)))))))........)).)))). ( -24.98)
>DroSec_CAF1 152597 80 - 1
GAGGAAGGAGAAAGAUGGGCUUAAUAUUUUGAAGCAGUUGCCAAAUG----------------AUUUUGUUAGGUAACACGUAGAAUAUCGUUCCA
..((((.((.....(((.((((.........)))).((((((.(((.----------------.....))).)))))).)))......)).)))). ( -20.20)
>DroSim_CAF1 156645 96 - 1
GAGGAAGGAGAAAGAUGGGCUUAAUAUUUUGAAGCAGUUGCCAAAUGUAUUCUCUGAUAAAUAAUUUUGUUAGGUAACACGUAGAAUAUCGUUCCA
..((((.((.....(((.((((.........)))).((((((....(......)(((((((....))))))))))))).)))......)).)))). ( -20.70)
>consensus
GAGGAAGGAGAAAGAUGGGCUUAAUAUUUUGAAGCAGUUGCCAAAUGUAUUCU_UG_UAAAUAAUUUUGUUAGGUAACACGUAGAAUAUCGUUCCA
..((((.((.....(((.((((.........)))).((((((.(((......................))).)))))).)))......)).)))). (-15.56 = -15.78 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:50 2006