Locus 5396

Sequence ID 2R_DroMel_CAF1
Location 17,420,343 – 17,420,434
Length 91
Max. P 0.554795
window8611

overview

Window 1

Location 17,420,343 – 17,420,434
Length 91
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 82.51
Mean single sequence MFE -19.40
Consensus MFE -11.94
Energy contribution -12.63
Covariance contribution 0.70
Combinations/Pair 1.24
Mean z-score -1.99
Structure conservation index 0.62
SVM decision value 0.04
SVM RNA-class probability 0.554795
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17420343 91 + 20766785
UUGGGCUUGUUUGAAUAAACAGGACACACUGUUGGCAAUAAAACCAGCACC------------AUCGCCAGCCCAACUAACCGAUAAACCCGGAAUAUCUAUG
((((((((((((....)))))((......((((((........))))))..------------....)))))))))....(((.......))).......... ( -23.50)
>DroSec_CAF1 136088 79 + 1
UUGGGCCUGUUUGAAUAAACAGGACACACUGUUGGCAAUAAAACCA------------------------GCCCAACUAACCGAUAAACCCGGAAUAUCUACG
((((((..((((.....(((((......))))).......))))..------------------------))))))....(((.......))).......... ( -20.10)
>DroSim_CAF1 139591 79 + 1
UUGGGCUUGUUUGAAUAAACAGGACACACUGUUGGCAAUAAAACCA------------------------GCCCAACUAACCGAUAAACCCGGAAUAUCUACG
(((((((.((((.....(((((......))))).......)))).)------------------------))))))....(((.......))).......... ( -22.30)
>DroEre_CAF1 135238 85 + 1
UUUGGCUUGUUUGAAUAAACAGGACACACUGUUGGCAAUAAAACCAGC------------------ACCAGCCCAACUAACCAAUAAACCCGGAAUAUCUACG
.(((((((((((....)))))))......((((((........)))))------------------).............))))................... ( -13.80)
>DroYak_CAF1 119643 87 + 1
UUUGGCUUGUUUGAAUAAACAGGACACACUGUUGGCAAUAAAACCAGCAC----------------ACCAGCCCAACUAACCAAUAAACCCGGAAUAUCUACG
.(((((((((((....)))))))......((((((........)))))).----------------..............))))................... ( -13.80)
>DroAna_CAF1 123796 103 + 1
UUGGGCAUGUUUGGACAAACAGGACACACAGUUGGCAAUAAACCCGGCGCCCAAAAACAACACACAGGCGGUCUAACUAACCAAUAAACCCCGAAUAUCUACG
((((((.(((.((..(.....)..)).)))(((((........)))))))))))............((.(((.((.........)).)))))........... ( -22.90)
>consensus
UUGGGCUUGUUUGAAUAAACAGGACACACUGUUGGCAAUAAAACCAGC___________________CCAGCCCAACUAACCAAUAAACCCGGAAUAUCUACG
((((((((((((....))))))........(((((........)))))......................))))))........................... (-11.94 = -12.63 +   0.70)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:48 2006