| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 17,420,006 – 17,420,110 |
| Length | 104 |
| Max. P | 0.737519 |
| Location | 17,420,006 – 17,420,110 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 77.26 |
| Mean single sequence MFE | -24.12 |
| Consensus MFE | -12.37 |
| Energy contribution | -14.53 |
| Covariance contribution | 2.17 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.51 |
| SVM decision value | 0.44 |
| SVM RNA-class probability | 0.737519 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17420006 104 + 20766785 CUUUAUCUGAAACUAGGCCCACAACUGUGCUUAAAUUGAGGUUUAAGAAACCGAAAGAC--ACAGCAACUAAAUGAAAUUUGCUGUUGGGCCUAAACCUAAAAUGC------------ .............((((((((.....((.(((((((....)))))))....(....)))--(((((((...........)))))))))))))))............------------ ( -25.80) >DroSec_CAF1 135754 98 + 1 CCUUAUCUGAAACUAGGCCCACCAGUGUAUCUAAAUUGAGGUUUAAGAAACCGAAAGAC--ACAGCAACUAAAUGAAAUUUGCUGUUGGGCCU------AAAAUGC------------ .............((((((((.((((........)))).((((.....)))).......--(((((((...........))))))))))))))------)......------------ ( -25.00) >DroSim_CAF1 139257 98 + 1 CCUUAUCUGAAACUAGGCCCACAAGUGUACCUAAAUUGAGGUUUAAGAAACCGAACGAC--ACAGCAACUAAAUGAAAUUUGCUGUUGGGCCU------AAAAUGC------------ .............((((((((..................((((.....)))).......--(((((((...........))))))))))))))------)......------------ ( -24.10) >DroEre_CAF1 134907 98 + 1 CUCUAUCUUUAACUAGGCCCAGAACUUGGCUUAAAUUGUGGUUUAAGACACCGAAAGAC--ACAGAAACGAAAUGAAAUUUGCUGUUGGGCCU------AAAAUGC------------ .............((((((((....(((((((((((....)))))))...)))).....--((((...((((......)))))))))))))))------)......------------ ( -22.40) >DroYak_CAF1 119291 98 + 1 CUUCAUCUUUAACUAGGCCCAGAACUUGGCUUAAAUUGAGGGUUAAGAAACCGAAAGAC--ACAGCAACUAAAUGAAAUUUGCUGUUCAACCU------AAAAUGC------------ (((.((((((((.((((((........))))))..)))))))).))).........((.--(((((((...........))))))))).....------.......------------ ( -21.10) >DroAna_CAF1 123448 107 + 1 CUC-GUC-AAAACUGGGCCAAGAAAUGCACUGGAAAUUCGG-CCAAAAAACCGAAAGACUAACUCGAACUAAAUGAAAUUUGU--UUGGGCCA------AGAAUGCCGGGCAUUUGGG (((-(((-.......)))....((((((.((((..((((((-((.......(....).......(((((............))--))))))).------.)))).))))))))))))) ( -26.30) >consensus CUUUAUCUGAAACUAGGCCCACAACUGUACUUAAAUUGAGGUUUAAGAAACCGAAAGAC__ACAGCAACUAAAUGAAAUUUGCUGUUGGGCCU______AAAAUGC____________ ...............((((((..................((((.....)))).........(((((((...........))))))))))))).......................... (-12.37 = -14.53 + 2.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:47 2006