Locus 5394

Sequence ID 2R_DroMel_CAF1
Location 17,419,175 – 17,419,265
Length 90
Max. P 0.820889
window8609

overview

Window 9

Location 17,419,175 – 17,419,265
Length 90
Sequences 4
Columns 93
Reading direction reverse
Mean pairwise identity 85.53
Mean single sequence MFE -21.88
Consensus MFE -17.02
Energy contribution -17.40
Covariance contribution 0.38
Combinations/Pair 1.06
Mean z-score -1.86
Structure conservation index 0.78
SVM decision value 0.68
SVM RNA-class probability 0.820889
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17419175 90 - 20766785
AUUUUUUCCUCCCCCCACCUUCU---AUUUCCUUGGCCAUCCCAUGCGUUGGUAUGUUGGUAUAUGUGCGAUGGUCAGGCCAAUCGAUGGGCU
.............((((...((.---(((..(((((((((((((((..(..(....)..)..)))).).))))))))))..))).)))))).. ( -25.10)
>DroSec_CAF1 134930 89 - 1
AUUUUUUCC-CUCCUCUCCUUCU---UUUUUCUUGGCCAUCCCAUACGUUGGUACCAUAGUAUAUGUGCGAUGGUCAGGCCAAUCGAUGGGCU
.........-......(((.((.---.((..(((((((((((((((..(((......)))..)))).).))))))))))..))..)).))).. ( -22.40)
>DroSim_CAF1 138431 89 - 1
AUUUUUUCC-CUCCUCUCCUCCU---UUUUUCUUGGCCAUCCCAUACGUUGGUACCAUAGUAUAUGUGCGAUGGUCAGGCCAAUCGAUGGGCU
.........-..........(((---......((((((...((((.(((..((((....))))....)))))))...)))))).....))).. ( -20.80)
>DroEre_CAF1 134083 87 - 1
AUUUUUUCC--UCCGCUCCUCUCCUUUUUUUCUUGGCCAACCCAUACGUUGGUAUA----CAUAUAUGCGAUGGUCAGGCCAAUCGAUGGGCU
.........--...((((.((...........((((((...((((.(((..((((.----...)))))))))))...))))))..)).)))). ( -19.22)
>consensus
AUUUUUUCC_CUCCUCUCCUCCU___UUUUUCUUGGCCAUCCCAUACGUUGGUACCAUAGUAUAUGUGCGAUGGUCAGGCCAAUCGAUGGGCU
................................((((((...((((.(((..((((....))))....)))))))...)))))).......... (-17.02 = -17.40 +   0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:46 2006