Locus 5393

Sequence ID 2R_DroMel_CAF1
Location 17,414,506 – 17,414,614
Length 108
Max. P 0.930101
window8608

overview

Window 8

Location 17,414,506 – 17,414,614
Length 108
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 97.53
Mean single sequence MFE -23.52
Consensus MFE -21.32
Energy contribution -21.35
Covariance contribution 0.03
Combinations/Pair 1.04
Mean z-score -1.54
Structure conservation index 0.91
SVM decision value 1.20
SVM RNA-class probability 0.930101
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17414506 108 - 20766785
CACUCCACAGGCCACAUCGUUCACUCAGCUUGACCCCAUGCAUUGCAUUCUGCAAUUUUCGCUAUGCCAAAUGUGGCACUUUAAGUGGACAACAAGCAAACUACGAAU
...((((((((((((((..........((.((....)).))...((((...((.......)).))))...))))))).))....)))))................... ( -23.70)
>DroSec_CAF1 130312 108 - 1
CACUCCACAGGCCACAUCGUUCACUCAGCUUGACCCCAUGCAUUGCAUUCUGCAAUUUUCGCUAUGCCAAAUGUGGCACUUUAAGUGGACAACAAGCAAACUACGAAU
...((((((((((((((..........((.((....)).))...((((...((.......)).))))...))))))).))....)))))................... ( -23.70)
>DroSim_CAF1 133795 108 - 1
CACUCCACAGGCCACAUCGUUCACUCAGCUUGACCCCAUGCAUUGCAUUCUGCAAUUUUCGCUAUGCCAAAUGUGGCACUUUAAGUGGACAACAAGCAAACUACGAAU
...((((((((((((((..........((.((....)).))...((((...((.......)).))))...))))))).))....)))))................... ( -23.70)
>DroEre_CAF1 129400 108 - 1
CACUCCACAGGCCACAUCGUUCACUCAGCUUGACCCCAUGCAUUGCAUUCUGCAAUUUUCGCUAUGCCAAAUGUGGCACUUUAAGUGGACAACAAGCAAACUACGAAU
...((((((((((((((..........((.((....)).))...((((...((.......)).))))...))))))).))....)))))................... ( -23.70)
>DroYak_CAF1 113663 108 - 1
CACUCCACAGGCCACAUCGUUCACUCAGCUUGACCCCAUGCAUUGCAUUCUGCAAUUUUCGCUAUGCCAAAUGUGGCACUUUAAGUGGACAACAAGCAAACUACGAAU
...((((((((((((((..........((.((....)).))...((((...((.......)).))))...))))))).))....)))))................... ( -23.70)
>DroAna_CAF1 118766 106 - 1
CA--CCGCAGUCCACAUCGUUCACUCGGCUUGACCUCAUGCAUUGCAUUCUGCAAUUUUCGCUAUACCAAAUGUGGCACUUUAAGUGGACAACAAGCAAGCUACGAAU
..--.....((((((............((.((....)).))(((((.....)))))....((((((.....)))))).......)))))).................. ( -22.60)
>consensus
CACUCCACAGGCCACAUCGUUCACUCAGCUUGACCCCAUGCAUUGCAUUCUGCAAUUUUCGCUAUGCCAAAUGUGGCACUUUAAGUGGACAACAAGCAAACUACGAAU
................((((.......(((((...(((((((((((.....)))))....))..(((((....)))))......))))....))))).....)))).. (-21.32 = -21.35 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:45 2006