Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 17,413,019 – 17,413,124 |
Length | 105 |
Max. P | 0.500000 |
Location | 17,413,019 – 17,413,124 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 92.20 |
Mean single sequence MFE | -23.22 |
Consensus MFE | -18.36 |
Energy contribution | -19.08 |
Covariance contribution | 0.72 |
Combinations/Pair | 1.07 |
Mean z-score | -2.30 |
Structure conservation index | 0.79 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17413019 105 - 20766785 CAGGAA-AGAGAGGGAAAUUGAUGAUGUGGAUGAAUGAACAUUGGGCAAAGUGAUUAAGAUUACGUUAGAAUGAUAACA--CGGCCAAAAA-GGUCAGAGCUCUCAAAA ......-...(((((...((((((((((..........))))).(((...(((((....)))))((((......)))).--..))).....-.)))))..))))).... ( -22.60) >DroSec_CAF1 128874 105 - 1 CAGGAA-AGAGAGGGAAAUUGAUGAUGUGGAUGAAUGAACAUUGGGCAAAGUGAUUAAGAUUACGUUAGAAUGAUAACA--CGGCCAAAAA-GGUCAGAGCUCUCAAAA ......-...(((((...((((((((((..........))))).(((...(((((....)))))((((......)))).--..))).....-.)))))..))))).... ( -22.60) >DroSim_CAF1 132384 105 - 1 CAGGAA-AGAGAGGGAAAUUGAUGAUGUGGAUGAAUGAACAUUGGGCAAAGUGAUUAAGAUUACGUUAGAAUGAUAACA--CGGCCAAAAA-GGUCAGAGCUCUCAAAA ......-...(((((...((((((((((..........))))).(((...(((((....)))))((((......)))).--..))).....-.)))))..))))).... ( -22.60) >DroEre_CAF1 127952 106 - 1 CAGGAAAAGAGGGGGAAAUUGAUGAUGUGGAUGAAUGAACAUUGGGCAAAGUGAUUAAGAUUACGUUAGAAUGAUAACA--CGGCCAAAAA-GGUCAGGGCUCUCAGGA ..........(((((...((((((((((..........))))).(((...(((((....)))))((((......)))).--..))).....-.)))))..))))).... ( -22.80) >DroYak_CAF1 112174 106 - 1 CAGGAAAAGCGAGGGAAAUUGAUGAUGUGGAUGAAUGAACAUUGGGCAAAGUGAUUAAGAUUACGUUCGAGUGAUAACA--CGGCCAAAAA-GGUCAGAGCUCUCAAAA ..........(((((...((((((((((..........))))).(((...(((......(((((......)))))..))--).))).....-.)))))..))))).... ( -23.40) >DroAna_CAF1 117387 108 - 1 CAGACAGACGGAGCAAAAUUGAUGAUCUGGAUGAAUGAGCAUUGGGCAAAGUGAUUAAGAUUACGUUAGAAUGAUAAGAUGCAGCCAGAAAUGGCCAGAGCUCUCAAA- ((..((((((...((....)).)).))))..))...((((.(((.(((..(((((....))))).(((......)))..))).((((....))))))).)))).....- ( -25.30) >consensus CAGGAA_AGAGAGGGAAAUUGAUGAUGUGGAUGAAUGAACAUUGGGCAAAGUGAUUAAGAUUACGUUAGAAUGAUAACA__CGGCCAAAAA_GGUCAGAGCUCUCAAAA ..........(((((...((((((((((..........))))).(((...(((((....)))))((((......)))).....))).......)))))..))))).... (-18.36 = -19.08 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:44 2006