Locus 5389

Sequence ID 2R_DroMel_CAF1
Location 17,408,940 – 17,409,031
Length 91
Max. P 0.763637
window8603

overview

Window 3

Location 17,408,940 – 17,409,031
Length 91
Sequences 5
Columns 97
Reading direction reverse
Mean pairwise identity 91.65
Mean single sequence MFE -31.96
Consensus MFE -27.68
Energy contribution -27.36
Covariance contribution -0.32
Combinations/Pair 1.14
Mean z-score -1.38
Structure conservation index 0.87
SVM decision value 0.51
SVM RNA-class probability 0.763637
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17408940 91 - 20766785
AAAGGGGCGUGUCUUUGGGUGUCGCCUACUUUGCAUUUCAAAUGCGCCGUCGCCGUGUCGUUUGUCUCGUCUACAUGGUUGUGGCAAUGCC------
((((((((((..(....)..).))))).))))((((.....))))((((..(((((((((.......))...)))))))..))))......------ ( -29.10)
>DroSec_CAF1 124818 91 - 1
AAGGGGGCGUGUCUUUGGGUGUCGCCUACUUUGCAUUUCAAAUGCGCCGUCGCCGUGUCGUUUGUCUCGUCUACAUGGUUGUGGCAAUGCC------
(((..(((((..(....)..).))))..))).((((.....))))((((..(((((((((.......))...)))))))..))))......------ ( -29.40)
>DroSim_CAF1 128370 91 - 1
AAGGAGGCGUGUCUUUGGGUGUCGCCUACUUUGCAUUUCAAAUGCGCCGUCGCCGUGUCGUUUGUCUCGUCUACAUGGCUGUGGCAAUGCC------
((((((((((..(....)..).))))).))))((((.....))))((((..(((((((((.......))...)))))))..))))......------ ( -31.20)
>DroEre_CAF1 123829 90 - 1
-AUGGGGCGUGCCCCUCGGUGUUGCCUACUUUGCAUUUCAAAUGCGCCGUCGCCGUGUCGUUUGUCUCGUCUACAUGGUUGUGGCAAUACC------
-..((((....))))..(((((((((.((...((((.....))))......(((((((((.......))...))))))).)))))))))))------ ( -33.00)
>DroYak_CAF1 107902 97 - 1
AAAGGGGCGUGCCCCUCGGUGUUGCCUACUUUGCAUUUCAAAUGCGCCGUCGCCGUGUCGUUUGUCUCGUCUACAUGGUUGUGGCAAUGCCGAGUUG
...((((....))))(((((((((((.((...((((.....))))......(((((((((.......))...))))))).))))))))))))).... ( -37.10)
>consensus
AAAGGGGCGUGUCUUUGGGUGUCGCCUACUUUGCAUUUCAAAUGCGCCGUCGCCGUGUCGUUUGUCUCGUCUACAUGGUUGUGGCAAUGCC______
(((((((((..((....))..).)))).))))((((.....))))((((..(((((((((.......))...)))))))..))))............ (-27.68 = -27.36 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:40 2006