| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 17,406,958 – 17,407,049 |
| Length | 91 |
| Max. P | 0.573627 |
| Location | 17,406,958 – 17,407,049 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 81.09 |
| Mean single sequence MFE | -16.48 |
| Consensus MFE | -13.04 |
| Energy contribution | -12.73 |
| Covariance contribution | -0.30 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.21 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.573627 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17406958 91 + 20766785 ---GACUCCUUCUCCAGCGGCCACGUUCAUAAAUA---AAAACGACAACGCAAAUAAAUUGUAGCGAAUUUUUAUAAUUAAUUGCAUUGUCGUCGUC--- ---(((.........((((....))))........---...(((((((.((((...((((((((.......))))))))..)))).))))))).)))--- ( -18.90) >DroVir_CAF1 132507 86 + 1 ---GGCAACUGCU--------CAUAUACAUGAAUACAAAAAAUGGCAACGCAAAUAAAUUGUAGUGAAUUUUUAUAAUUAAUUGUAUUGUCGUUUGG--- ---.((....))(--------(((....)))).......(((((((((..(((...((((((((.......))))))))..)))..)))))))))..--- ( -16.60) >DroPse_CAF1 131666 90 + 1 UUCGACUCCUUCCUU--C--GUCCGUUCAUAAAUA---AAAACUACAACGCAAAUAAAUUGUAGCGAAUUUUUAUAAUUAAUUGUAUUGUCGUCGGC--- .(((((.........--.--....(((........---..))).((((..(((...((((((((.......))))))))..)))..)))).))))).--- ( -11.00) >DroEre_CAF1 121881 90 + 1 ---GACUCCUGCUCC-GCGACCACGUUCAUAAAUA---AAAACGACAACGCAAAUAAAUUGUAGCGAAUUUUUAUAAUUAAUUGCAUUGUCGUCGAC--- ---............-.((((...(((........---..)))(((((.((((...((((((((.......))))))))..)))).)))))))))..--- ( -16.30) >DroYak_CAF1 105821 94 + 1 ---GACUCCUUCUCCGGCGACCGCGUUCAUAAAUA---AAAACGACAACGCAAAUAAAUUGUAGCGAAUUUUUAUAAUUAAUUGCAUUGUCGUCGUCGUC ---...........(((((((...(((........---..)))(((((.((((...((((((((.......))))))))..)))).)))))))))))).. ( -22.30) >DroPer_CAF1 130524 90 + 1 UUCGACUCCUUCCUU--C--GUUCGUUCAUAAAUA---AAAACGACAACGCAAAUAAAUUGUUGCGAAUUUUUAUAAUUAAUUGUAUUGUUGUCGGC--- ...............--.--...............---....(((((((((((........)))).......(((((....)))))..)))))))..--- ( -13.80) >consensus ___GACUCCUUCUCC__C__CCACGUUCAUAAAUA___AAAACGACAACGCAAAUAAAUUGUAGCGAAUUUUUAUAAUUAAUUGCAUUGUCGUCGGC___ .........................................(((((((.((((...((((((((.......))))))))..)))).)))))))....... (-13.04 = -12.73 + -0.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:39 2006