| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 17,403,856 – 17,403,947 |
| Length | 91 |
| Max. P | 0.910584 |
| Location | 17,403,856 – 17,403,947 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 76.97 |
| Mean single sequence MFE | -13.12 |
| Consensus MFE | -9.23 |
| Energy contribution | -9.37 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.70 |
| SVM decision value | 1.07 |
| SVM RNA-class probability | 0.910584 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17403856 91 - 20766785 AA--------AAAAGAAC--GCUCAAAAUAAUCAAAACGAAACCUAUAAUUUGUUUUAACAAGUGAAACGCCCCGAGUUUCAUAAUUUACCCU--------------CGGCACAU ..--------........--(((..........((((((((........)))))))).....(((((((.......)))))))..........--------------.))).... ( -13.20) >DroVir_CAF1 129152 101 - 1 AC-----------CGAGC--GACUGAAAUAAUCAAAAC-AAACCUAUAAUUUGUUUUAACAAGUGAAACGCCCCAAGUUUCGUAAUUUACCCUCCAGCCCCUGCCACCGUCACAU ..-----------...(.--(((..........(((((-(((.......)))))))).......(((((.......)))))...........................))).).. ( -11.70) >DroPse_CAF1 128244 98 - 1 AA--------CAAAAAUCCACCUCAAAAUAAUCAAAACGAAGCCUAUAAUUUGUUUUAACAAGUGAAACGCCCCGAGUUUCAUAAUUUACCCUCA--------ACG-CGGCACAU ..--------..........((.(.........((((((((........)))))))).....(((((((.......)))))))............--------..)-.))..... ( -12.80) >DroMoj_CAF1 160833 85 - 1 AG-----------CGAGU--GACUGCUAUAAUCAAAAC-AAACCUAUAAUUUGUUUUAACAAGUGAAACGCCCCAAGUUUCAUAAUUUAUCC----------------CUCACAU .(-----------.(((.--((...........(((((-(((.......)))))))).....(((((((.......)))))))......)).----------------))).).. ( -14.60) >DroAna_CAF1 109552 99 - 1 GAAACAACAGAGAAAAAA--GCUCAAAAUAAUCAAAACGAAACCUAUAAUUUGUUUUAACAAGUGAAACGCCCCGAGUUUCAUAAUUCACCCU--------------CGGCACAU .........(((......--.............((((((((........)))))))).....(((((((.......)))))))........))--------------)....... ( -13.60) >DroPer_CAF1 127160 98 - 1 AA--------CAAAAAUCCACCUCAAAAUAAUCAAAACGAAGCCUAUAAUUUGUUUUAACAAGUGAAACGCCCCGAGUUUCAUAAUUUACCCACA--------ACG-CGGCACAU ..--------..........((.(.........((((((((........)))))))).....(((((((.......)))))))............--------..)-.))..... ( -12.80) >consensus AA_________AAAAAAC__GCUCAAAAUAAUCAAAACGAAACCUAUAAUUUGUUUUAACAAGUGAAACGCCCCGAGUUUCAUAAUUUACCCU______________CGGCACAU ....................(((..........((((((((........)))))))).....(((((((.......))))))).........................))).... ( -9.23 = -9.37 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:38 2006