| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 17,397,888 – 17,397,979 |
| Length | 91 |
| Max. P | 0.514090 |
| Location | 17,397,888 – 17,397,979 |
|---|---|
| Length | 91 |
| Sequences | 3 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 95.24 |
| Mean single sequence MFE | -21.10 |
| Consensus MFE | -16.89 |
| Energy contribution | -16.67 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.25 |
| Structure conservation index | 0.80 |
| SVM decision value | -0.04 |
| SVM RNA-class probability | 0.514090 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17397888 91 - 20766785 UCGUGUCCAAAGAUGAAAAUCCCGAGGGCAAACCAACGGAGCAAACGGUUUGGAAUUGCAGAAAAAGUCAAGCCAAAAAUGGCCAUGAAAA (((((.(((..(((....)))(((..((....))..))).......(((((((..((......))..))))))).....))).)))))... ( -24.20) >DroSec_CAF1 113699 91 - 1 UCGUGUCCAAAGAUGAAAAUCCCGAGGGCAUACCAACGGAGCAAACGAUUUGGAAUUGCAGAAAAAGUCAAGCCAAAAAUGGCCAAGAAAA ..((.(((((((((....)))(((..((....))..))).........))))))...))............((((....))))........ ( -19.30) >DroYak_CAF1 96414 91 - 1 UCGUGUUCAAAGAUGAAAAUCCCGAGGGCAAAGCAGCGGAGCAAACGCUUUGGAAUUGCAGAAAAAGUCAAGCCAAAAAUGGCCAAGAAAA ..((.(((...(((....)))..))).))...((((((((((....))))))...))))............((((....))))........ ( -19.80) >consensus UCGUGUCCAAAGAUGAAAAUCCCGAGGGCAAACCAACGGAGCAAACGAUUUGGAAUUGCAGAAAAAGUCAAGCCAAAAAUGGCCAAGAAAA ..((.(((((((((....)))(((..(......)..))).........))))))...))............((((....))))........ (-16.89 = -16.67 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:37 2006