Locus 5385

Sequence ID 2R_DroMel_CAF1
Location 17,390,095 – 17,390,186
Length 91
Max. P 0.593813
window8599

overview

Window 9

Location 17,390,095 – 17,390,186
Length 91
Sequences 5
Columns 112
Reading direction reverse
Mean pairwise identity 73.84
Mean single sequence MFE -12.48
Consensus MFE 0.00
Energy contribution 0.00
Covariance contribution 0.00
Combinations/Pair nan
Mean z-score -1.28
Structure conservation index -0.00
SVM decision value 0.12
SVM RNA-class probability 0.593813
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17390095 91 - 20766785
----------------AAGAUUAACAAAUAAAAUUUAACAUUUCCAUUUCAUCUACCUUGAU-----UUUGCUCUCAAAAAUCCUAGGAAAACUAAACCAGCAAACUGCUGC
----------------.......................................(((.(((-----(((.......))))))..)))..........((((.....)))). ( -11.10)
>DroSec_CAF1 105935 91 - 1
----------------AAGAUUAACAAAUAAAAUUUAACAUUUUCAAUAUUUCUACCUUGAU-----UUUGCUCUCAAAAAUACUUGGAAAAAUAAGCCAGCAAACUGCUGC
----------------........................((((((((((((.....((((.-----.......))))))))).))))))).......((((.....)))). (  -9.30)
>DroSim_CAF1 109404 88 - 1
----------------AAGAUUAACAAAUACAAU---ACAUUUCCAUUUUUUCUACCUUGAU-----UUUGCUCUCAAAAAUACUAGGAAAAAUAAGCCAGCAAACUGCUGC
----------------..................---........((((((((((.....((-----(((.......)))))..))))))))))....((((.....)))). ( -11.20)
>DroEre_CAF1 104787 110 - 1
U--UGUGGUAAUCUCCAAGAUUAACAAAUAAAAUUGGACAUUUCCCAUUUUUCCACCUUGCUUUCUUUUUUCUCUCAAAAAUACUAGGAAAAAUAAACCUGCAAAUUGGUGC
.--((.((.(((.(((((..(((.....)))..))))).))).))))......((((((((.((..(((((((.............)))))))..))...))))...)))). ( -18.02)
>DroYak_CAF1 88160 99 - 1
GAGAAUGAUAUAUUCCAGAAUUAACAAAUAAAAUUGGACAUUUCCCAUUUUUCCACCUUGAU-----UUUCCUCUCAAAAAUACUAUGAAA--UAAA------UAGUGCUGG
((((..((.....)).((((((((.....(((((.(((....))).)))))......)))))-----)))..)))).....((((((....--...)------))))).... ( -12.80)
>consensus
________________AAGAUUAACAAAUAAAAUUGAACAUUUCCAAUUUUUCUACCUUGAU_____UUUGCUCUCAAAAAUACUAGGAAAAAUAAACCAGCAAACUGCUGC
................................................................................................................ (  0.00 =   0.00 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:36 2006