Locus 5382

Sequence ID 2R_DroMel_CAF1
Location 17,373,126 – 17,373,240
Length 114
Max. P 0.728689
window8592

overview

Window 2

Location 17,373,126 – 17,373,240
Length 114
Sequences 5
Columns 114
Reading direction forward
Mean pairwise identity 91.49
Mean single sequence MFE -36.72
Consensus MFE -30.22
Energy contribution -31.06
Covariance contribution 0.84
Combinations/Pair 1.09
Mean z-score -1.48
Structure conservation index 0.82
SVM decision value 0.42
SVM RNA-class probability 0.728689
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17373126 114 + 20766785
AUGGCAUGAAGUCCAAGUCGAGGUCCGAUGAAAUCGGUGGCAGGGCAUCGUCUUCAUCAUCCGAGUAAUUCAUGCCGAUUGGCAGAUUCUGCUGGAAACCAAUGGACUUAUUGG
.(((((((((.....(.(((.(((..((((((..(((((......)))))..)))))))))))).)..))))))))).(..((((...))))..)...((((((....)))))) ( -38.20)
>DroSec_CAF1 89001 114 + 1
AUGGCAUGCAGUCCAAGUCGAAGUCCGAUGAAAUCGGUGGCAGGGCAUCGUCUUCAUCAUCCGAGUAGUUUAUACCAAUGGGCAGAUUCUGCUGGAAACCAAUGGACUUAUUGG
............((((....((((((((((((..(((((......)))))..)))))).(((.(((((..(...((....))...)..)))))))).......)))))).)))) ( -35.00)
>DroSim_CAF1 91425 114 + 1
AUGGCAUGAAGUCCAAGUCGAAGUCCGAUGAAAUCGGUGGUAGGGCAUCGUCUUCAUCAUCCGAGUAGUUCAUACCAAUGGGCAGAUUCUGCUGGAAACCAAUGGACUUAUUGG
............((((....((((((((((((..(((((......)))))..)))))).(((.(((((.((...((....))..))..)))))))).......)))))).)))) ( -34.70)
>DroEre_CAF1 87755 114 + 1
AUGGCAUGAAAUCCAAGUCGUGGUCCGAUGAAAUCGGUGGAAGGACAUCGUCUUCAUCAUCCGAGUAAUUCAUGCCGAUGGGCAGGUUCUGCUGGAAGCCAAUGGACUUGUUGG
.(((((((((.....(.(((.(((..((((((..(((((......)))))..)))))))))))).)..)))))))))...(((((((((...(((...)))..))))))))).. ( -39.60)
>DroYak_CAF1 70379 114 + 1
AUGGCAUGAAAUCCAAGUCUAGAUCGGAUGCAAGCGGUGGCAGGACAUCGUCCUCAUCAUCCGAGUAAUUCAUGCCGAUGGGCAGAUUCUGCUGGAAGCCAAUGGACUUAUUGG
.(((((((((.((........))(((((((...((((((......))))))......)))))))....))))))))).(.(((((...))))).)...((((((....)))))) ( -36.10)
>consensus
AUGGCAUGAAGUCCAAGUCGAGGUCCGAUGAAAUCGGUGGCAGGGCAUCGUCUUCAUCAUCCGAGUAAUUCAUGCCGAUGGGCAGAUUCUGCUGGAAACCAAUGGACUUAUUGG
............((((....((((((((((((..(((((......)))))..)))))).(((.((((..((.((((....))))))...))))))).......)))))).)))) (-30.22 = -31.06 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:30 2006