Locus 5381

Sequence ID 2R_DroMel_CAF1
Location 17,371,432 – 17,371,530
Length 98
Max. P 0.622651
window8591

overview

Window 1

Location 17,371,432 – 17,371,530
Length 98
Sequences 4
Columns 101
Reading direction forward
Mean pairwise identity 96.48
Mean single sequence MFE -24.97
Consensus MFE -22.27
Energy contribution -22.27
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.71
Structure conservation index 0.89
SVM decision value 0.18
SVM RNA-class probability 0.622651
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17371432 98 + 20766785
UCGGC---UCCUCGAUGGGCAAUCAUGGCAAAAGCCACCGAAAUGGAGAAGCAGAAACAUUUCUCAGAAGGCAAAACAUGACACAUCUCAUUAUGAGGACU
..((.---(((((((((((...(((((((....))).((......((((((........))))))....))......)))).....))))))..))))))) ( -22.90)
>DroSec_CAF1 87281 98 + 1
UCGGC---UCCUCGAUGGGCAAUCAUGGCAAAAGCCACCGAAAUGGAGAUGCAGAAACAUUUCUCAGAAGGCAAAACAUGACACAUCUCAUUAUGAGGACU
..((.---(((((((((((...(((((((....))).((....((((((((......)))))).))...))......)))).....))))))..))))))) ( -24.90)
>DroSim_CAF1 89696 98 + 1
UCGGC---UCCUCGAUGGGCAAUCAUGGCAAAAGCCACCGAAAUGGAGAAGCAGAAACAUUUCUCAGAAGGCAAAACAUGACACAUCUCAUUAUGAGGACU
..((.---(((((((((((...(((((((....))).((......((((((........))))))....))......)))).....))))))..))))))) ( -22.90)
>DroYak_CAF1 68410 101 + 1
GUGGCCCAUCCUCGAUGGGCAAUCAUGGCAAAAGCCACCGAAAUGGAGAAGAAGAAACAUUUCUCAGAAGGCAAAACAUGACACAUCUCAUUAUGAGGACU
((((((((((...)))))))..(((((((....))).((......((((((........))))))....))......))))))).((((.....))))... ( -29.20)
>consensus
UCGGC___UCCUCGAUGGGCAAUCAUGGCAAAAGCCACCGAAAUGGAGAAGCAGAAACAUUUCUCAGAAGGCAAAACAUGACACAUCUCAUUAUGAGGACU
........(((((((((((...(((((......(((...((((((............))))))......)))....))))).....))))))..))))).. (-22.27 = -22.27 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:29 2006