Locus 5380

Sequence ID 2R_DroMel_CAF1
Location 17,369,623 – 17,369,724
Length 101
Max. P 0.916556
window8590

overview

Window 0

Location 17,369,623 – 17,369,724
Length 101
Sequences 5
Columns 102
Reading direction reverse
Mean pairwise identity 88.11
Mean single sequence MFE -27.14
Consensus MFE -20.74
Energy contribution -21.70
Covariance contribution 0.96
Combinations/Pair 1.09
Mean z-score -2.18
Structure conservation index 0.76
SVM decision value 1.11
SVM RNA-class probability 0.916556
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17369623 101 - 20766785
UUGAUCGAUGUGCUGCUUGGUUGCAAAUUUGUGUGCACUUUGCAUAAAUUAGUUAAAAGUGGGUGCAUAAAUUGUUAUUGAAAAAGCAGUUUAACCAUGAG-
....(((.((..((((((....((.(((((((((.......))))))))).))...)))).))..))(((((((((........)))))))))....))).- ( -21.80)
>DroSec_CAF1 85536 100 - 1
UUGAUCGAUGUGCUGCUUGGUUGCAAAUUUGUGUGCACUUUGCAUAAAUUAGUUAAAAGUGAGUGCAUAAAUUGUUAUUGAAGAAGCAGCUUG--GAUCAUU
.(((((.(...(((((((..((((((.(((((((.((((((((........))..))))))...)))))))))))....))..))))))).).--))))).. ( -29.20)
>DroSim_CAF1 87963 100 - 1
UUGAUCGAUGUGCUGCUUGGUUGCAAAUUUGUGUGCACUUUGCAUAAAUUAGUUAAAAGUGGGUGCAUAAAUUGUUAUUGAAAAAGCAGUUUG--CAUCAUU
......((((((((((((..((((((...((..(.((((((((........))..)))))).)..))....))))....))..)))))))..)--))))... ( -27.10)
>DroEre_CAF1 84097 102 - 1
UUGAUCGAUGUGCUGCUGGGUUGCAAAUUUGUGUGCACUUUGCUUGAAUUAGUCAAAAGUGGACGCCUAAAUUGUUAUUGAAAAGGCACCUGAAAGUUCAGU
.........(((((..(.(((.((((.((.((((.(((((((((......)))..)))))).))))..)).)))).))).)...)))))((((....)))). ( -24.90)
>DroYak_CAF1 66525 102 - 1
UUGAUCGAUGUGCUGCUUGGCUGCAAAUUUGUGUGCACUUUGCAGGAAUUAGUUAAAAGUGGGCGCAUAAAUUGUUAUUGAAGCAGCAGUUGACUGAUCAGU
(((((((...((((((((.(..((((...(((((.((((((((........))..)))))).)))))....))))...).))))))))......))))))). ( -32.70)
>consensus
UUGAUCGAUGUGCUGCUUGGUUGCAAAUUUGUGUGCACUUUGCAUAAAUUAGUUAAAAGUGGGUGCAUAAAUUGUUAUUGAAAAAGCAGUUUA__GAUCAGU
.(((((.....(((((((....((((.((((((((((((((((........))..))))))..))))))))))))........))))))).....))))).. (-20.74 = -21.70 +   0.96)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:28 2006