Locus 5379

Sequence ID 2R_DroMel_CAF1
Location 17,363,246 – 17,363,345
Length 99
Max. P 0.806543
window8589

overview

Window 9

Location 17,363,246 – 17,363,345
Length 99
Sequences 6
Columns 112
Reading direction forward
Mean pairwise identity 79.64
Mean single sequence MFE -34.42
Consensus MFE -17.58
Energy contribution -16.80
Covariance contribution -0.78
Combinations/Pair 1.25
Mean z-score -2.39
Structure conservation index 0.51
SVM decision value 0.63
SVM RNA-class probability 0.806543
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17363246 99 + 20766785
CGUCGGGAAGUUGAUGUUGCUUUUGGGCCUAGACAAGCGGCAAGUUAAUUUAUGCACAACAGCAAAA-------------ACAGUCGGCGGAACGGCAACAACACAAUGCCA
((((((...(((....(((((.(((.((.((((..(((.....)))..)))).)).))).))))).)-------------))..))))))....((((.........)))). ( -26.00)
>DroPse_CAF1 86069 110 + 1
CAC--CGAGGUUGAUGUUGCUGCCGGGCCUAGACAAGCGGCAAGUUAAUUUAUGCAACACUGCAACACGGCGCGGCAACAACAACGGCCGCUCUGGCAGCAACACAAUGCCA
...--...(((((.(((((((((((((((((((..(((.....)))..))))((((....))))....)))(((((..........))))).))))))))))))))..))). ( -44.20)
>DroSec_CAF1 79207 99 + 1
CGCCGGGAUGUUGAUGUUGCUUUUGGGCCUAGACAAGCGGCAAGUUAAUUUAUGCACAACAGCAAAA-------------ACAGGCGGCGGAACGGCAACAACACAAUGCCA
(((((...((((....(((((.(((.((.((((..(((.....)))..)))).)).))).))))).)-------------)))..)))))....((((.........)))). ( -30.40)
>DroEre_CAF1 77692 99 + 1
CGCCUGGAAGUUGAUGUUGCUUUUGGGCCUAGACAAGCGGCAAGUUAAUUUAUGCACAACAGCAUAA-------------ACUGCCGGCGGAACGGCAACAACACAAUGCCA
.(((..(((((.......)))))..)))..........((((......(((((((......))))))-------------).(((((......))))).........)))). ( -34.50)
>DroAna_CAF1 72460 96 + 1
CA---AUAAGCUGAUGUUGCUGCCGGGCCUAGACAAGCGGCAAGUUAAUUUAUGCAACACAGCAACA-------------ACAGGCGGCGGCACGGCAACAACACAAUGCCA
..---....((((.((((((((((..(((.........)))...........(((......)))...-------------...))))))))))))))............... ( -30.20)
>DroPer_CAF1 85268 110 + 1
CAC--CGAGGUUGAUGUUGCUGCCGGGCCUAGACAAGCGGCAAGUUAAUUUAUGCAACACUGCAACACGGCGCGGCAACAACAACGGCCGCUGUGGCAGCAACACAAUGCCA
...--...(((((.(((((((((((.(((((((..(((.....)))..))))((((....))))....)))(((((..........)))))..)))))))))))))..))). ( -41.20)
>consensus
CAC__GGAAGUUGAUGUUGCUGCCGGGCCUAGACAAGCGGCAAGUUAAUUUAUGCAAAACAGCAAAA_____________ACAGCCGGCGGAACGGCAACAACACAAUGCCA
.........(.((.(((((((((((.(((.........)))...........(((......)))........................))))..))))))).)))....... (-17.58 = -16.80 +  -0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:27 2006