| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 17,358,320 – 17,358,412 |
| Length | 92 |
| Max. P | 0.828154 |
| Location | 17,358,320 – 17,358,412 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 86.61 |
| Mean single sequence MFE | -23.80 |
| Consensus MFE | -22.24 |
| Energy contribution | -22.27 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.93 |
| SVM decision value | 0.70 |
| SVM RNA-class probability | 0.828154 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17358320 92 + 20766785 UGCGGCAUGCGAAACUUGCCCAAGCCAAUUAAUUACGCAUCGAUUUGUGACUCGGCAGGUUUUCGCUUAUGGCCAAAACCCAAA------GCCCACAU ((.(((..((((((((((((.((.....)).....((((......))))....)))))).))))))...(((.......)))..------)))))... ( -24.20) >DroSec_CAF1 74179 92 + 1 UGCGGCAUGCGAAACUUGCCUAAGCCAAUUAAUUACGCAUCGAUUUGUGACUCGGCAGGUUUUCGCUUAUGGCCAAAACCGAAA------GCCCACAC ((.(((..(((((((((((((((.....)))....((((......))))....)))))).))))))...(((......)))...------)))))... ( -26.00) >DroSim_CAF1 76700 92 + 1 UGCGGCAUGCGAAACUUGCCCAAGCCAAUUAAUUACGCAUCGAUUUGUGACUCGGCAGGUUUUCGCUUAUGGCCAAAACCGAAA------GCCCACAC ((.(((..((((((((((((.((.....)).....((((......))))....)))))).))))))...(((......)))...------)))))... ( -24.40) >DroEre_CAF1 72733 98 + 1 UGCGGCAUGCGAAUCUUGCCCAAGCCAAUUAAUUACGCAUCGAUUUGUGACUCGGCAGGUUUUCGCUUAUGGCCAAAACCCACACUCAAUACCAAUAC ...(((..(((((.((((((.((.....)).....((((......))))....))))))..))))).....)))........................ ( -22.10) >DroYak_CAF1 54456 79 + 1 UGCGGCAUGCGAAACUUGCCCAAGCCAAUUAAUUACGCAUCGAUUUGUGACUCGGCAGGUUUUCGCUUAUGGCCA-------------------AUAC ...(((..((((((((((((.((.....)).....((((......))))....)))))).)))))).....))).-------------------.... ( -23.40) >DroAna_CAF1 67571 98 + 1 UGCGGCAUGCGAAACUUGCUCAAGCCAAUUAAUUACGCAUCGAUUUGUGACUCGGCAGGUUUUCGCAUAUGGCCCAAACUCAAACUCAAACUCAAUCU ((.(((((((((((((((((..((.((...((((.......))))..)).)).)))))).))))))))...)))))...................... ( -22.70) >consensus UGCGGCAUGCGAAACUUGCCCAAGCCAAUUAAUUACGCAUCGAUUUGUGACUCGGCAGGUUUUCGCUUAUGGCCAAAACCCAAA______GCCCACAC ...(((..((((((((((((.((.....)).....((((......))))....)))))).)))))).....)))........................ (-22.24 = -22.27 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:24 2006