| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 17,351,776 – 17,351,948 |
| Length | 172 |
| Max. P | 0.803288 |
| Location | 17,351,776 – 17,351,880 |
|---|---|
| Length | 104 |
| Sequences | 5 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 92.71 |
| Mean single sequence MFE | -19.68 |
| Consensus MFE | -18.02 |
| Energy contribution | -18.70 |
| Covariance contribution | 0.68 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.13 |
| Structure conservation index | 0.92 |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.579747 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17351776 104 + 20766785 CUCUCAAUUAAUUCAAUUAAUUAUCAAAUAGUUUAUGCG--UUUGUGUGUGUUUGUAUGAUUAUGUGAUUGAGAUGAUAUGCAAAUAGUUUUAUCAACUGUUUAUG .(((((((((.......(((((((((((((...(((((.--...))))))))))).)))))))..)))))))))........((((((((.....))))))))... ( -20.90) >DroSec_CAF1 67518 102 + 1 CUCUCAAUUAAUUCAAUUAAUUAUCAAACAGUUUAUG----UGUGUGUGUGUUUGUAUGAUUAUGGGAUUGAGAUGAUAUGCAAAUAGUUUUAUCAACUGUUUAUG .((((((((...(((..(((((((((((((...(((.----...)))..)))))).))))))))))))))))))........((((((((.....))))))))... ( -20.50) >DroSim_CAF1 69985 102 + 1 CUCUCAAUUAAUUCAAUUAAUUAUCAAACAGUUUAUG----UAUGUGUGUGUUUGUAUGAUUAUGUGAUUGAGAUGAUAUGCAAAUAGUUUUAUCAACUGUUUAUG .(((((((((.......(((((((((((((...(((.----...)))..)))))).)))))))..)))))))))........((((((((.....))))))))... ( -21.40) >DroEre_CAF1 66212 98 + 1 CUCUCAAUUAAUUCAAUUAAUUAUCAGACAGCUUAU--------GUGUGUGUGUGUGUGAUUAUGUGAUUGAGAUGAUAUGCAAAUAGUUUUAUCAACUGUUUAUG .(((((((((.......(((((((((.(((((....--------..)).))).)).)))))))..)))))))))........((((((((.....))))))))... ( -20.80) >DroYak_CAF1 47609 106 + 1 CUCUCAAUUAAUUCAAUUAAUUAUCAAACAGUUUUUGAGUGUGUGUGUGUGUGUGUAUGAUUAUGUGACUGAGAUGAUAUGCAAAUAGUUUUAUCAACUGUUUAUG ...................((((((...(((((..(((..(((..(......)..)))..)))...))))).))))))....((((((((.....))))))))... ( -14.80) >consensus CUCUCAAUUAAUUCAAUUAAUUAUCAAACAGUUUAUG____UGUGUGUGUGUUUGUAUGAUUAUGUGAUUGAGAUGAUAUGCAAAUAGUUUUAUCAACUGUUUAUG .(((((((((.......(((((((((((((...(((........)))..)))))).)))))))..)))))))))........((((((((.....))))))))... (-18.02 = -18.70 + 0.68)
| Location | 17,351,844 – 17,351,948 |
|---|---|
| Length | 104 |
| Sequences | 5 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 96.63 |
| Mean single sequence MFE | -21.62 |
| Consensus MFE | -17.52 |
| Energy contribution | -17.92 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.62 |
| SVM RNA-class probability | 0.803288 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17351844 104 - 20766785 AAAUGCGCAUUUUCAUUUAAGUGCUCAACUUUGUCAUCACUUUUGUUGUUUAACUUGUGUAUGAAUGGCAUAAACAGUUGAUAAAACUAUUUGCAUAUCAUCUC ..((((((((((......)))))).....(((((((.......(((..((((((....)).))))..)))........))))))).......))))........ ( -21.16) >DroSec_CAF1 67584 104 - 1 AAAUGCGCAUUUUAAUUUAAGUGCUCAACUUUGUCAUCACUUUUGUUGUUUAAGUUGUGUAUGAAUGGCAUAAACAGUUGAUAAAACUAUUUGCAUAUCAUCUC ..((((((((((......)))))).....(((((((.(((....))((((((.((..(......)..)).))))))).))))))).......))))........ ( -21.20) >DroSim_CAF1 70051 104 - 1 AAAUGCGCAUUUUCAUUUAAGUGCUCAACUUUGUCAUCAGUUUUGUUGUUUAACUUGUGUAUGAAUGGCAUAAACAGUUGAUAAAACUAUUUGCAUAUCAUCUC ..((((((((((......)))))).....(((((((...(((((((..((((((....)).))))..))).))))...))))))).......))))........ ( -23.70) >DroEre_CAF1 66274 104 - 1 AAAUGCGCAUUUUCAUUUUAGUGCUCAACUUUGUCAUCCCUUUUGUUGUUUAACUUGUGUAUGAAUGGCAUAAACAGUUGAUAAAACUAUUUGCAUAUCAUCUC ..(((((((((........))))).....(((((((.......(((..((((((....)).))))..)))........))))))).......))))........ ( -20.06) >DroYak_CAF1 47679 104 - 1 AAAUGCGAAUUUUCAUUUAAGUGCUCAACUUUGUCAUCAUUUUUGUUGUUUAACUUGUGGUUGAAUGGCAUAAACAGUUGAUAAAACUAUUUGCAUAUCAUCUC ..((((((((..........((.....))(((((((...(((.(((..((((((.....))))))..))).)))....)))))))...))))))))........ ( -22.00) >consensus AAAUGCGCAUUUUCAUUUAAGUGCUCAACUUUGUCAUCACUUUUGUUGUUUAACUUGUGUAUGAAUGGCAUAAACAGUUGAUAAAACUAUUUGCAUAUCAUCUC ..((((((((((......)))))).....(((((((.......(((..((((.........))))..)))........))))))).......))))........ (-17.52 = -17.92 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:20 2006