Locus 5373

Sequence ID 2R_DroMel_CAF1
Location 17,351,114 – 17,351,210
Length 96
Max. P 0.628170
window8579

overview

Window 9

Location 17,351,114 – 17,351,210
Length 96
Sequences 5
Columns 98
Reading direction reverse
Mean pairwise identity 94.63
Mean single sequence MFE -30.18
Consensus MFE -23.82
Energy contribution -24.50
Covariance contribution 0.68
Combinations/Pair 1.08
Mean z-score -1.66
Structure conservation index 0.79
SVM decision value 0.19
SVM RNA-class probability 0.628170
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17351114 96 - 20766785
UGACCUUUGACACCUACGCAACACCUCCGUGGAGAUGGAAGGUCAAGUGGUUUCCACACAGUUUCCACACUCUCGGUGG--UGCUGGGCAAACAAAUU
((((((((.(...(((((.........)))))...).)))))))).((((...)))).((((..((((.......))))--.))))............ ( -27.70)
>DroSec_CAF1 66848 96 - 1
UGACCUUUGACACCUACGCAACACCUCCGUGGAGGUGGAAGCUCAAGAGGUUUCCACACAGUUUCCACACUCGCGGUGG--UGCUGGGCAAACAAAUU
((.(((..(.((((..(((..(((....)))((((((((((((...(.((...)).)..))))))))).))))))..))--))).)))))........ ( -32.70)
>DroSim_CAF1 69315 96 - 1
UGACCUUUGACACCUACGCAACACCUCCGUGGAGAUGGAAGCUCAAGAGGUUUCCACACAGUUUCCACACUCGCGGUGG--UGCUGGGCAAACAAAUU
.....((((...((((.(((.((((.(.(((((((((((((((.....)))))))).....)))))))....).)))).--)))))))....)))).. ( -30.20)
>DroEre_CAF1 65534 95 - 1
UGACCUUUGACACCUACGCAACACCUCCGUGGUGAUGGAAGC-CAAGAGGUUUCCACACAGUUUCCACACUCUCGGUGG--UGCUGGGCAAACAUAUU
............((((.(((.((((...((((((.(((((((-(....))))))))))).(....).)))....)))).--))))))).......... ( -29.10)
>DroYak_CAF1 46933 98 - 1
UGACCUUUGACACCUACGCAACACCUCCGUGGUGAUGGAAGCUCAAGAGGUUUCCACACAGUUUCCAUACGCUCGCUGGUGUGCUGGGCAAACAAAUU
.....((((...((((.(((.((((..((.(((((((((((((...(.((...)).)..))))))))).))))))..)))))))))))....)))).. ( -31.20)
>consensus
UGACCUUUGACACCUACGCAACACCUCCGUGGAGAUGGAAGCUCAAGAGGUUUCCACACAGUUUCCACACUCUCGGUGG__UGCUGGGCAAACAAAUU
............((((.(((.((((...(((((((((((((((.....)))))))).....)))))))......))))...))))))).......... (-23.82 = -24.50 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:18 2006