Locus 5372

Sequence ID 2R_DroMel_CAF1
Location 17,350,668 – 17,350,786
Length 118
Max. P 0.804935
window8578

overview

Window 8

Location 17,350,668 – 17,350,786
Length 118
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 81.17
Mean single sequence MFE -34.98
Consensus MFE -29.00
Energy contribution -29.00
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.64
Structure conservation index 0.83
SVM decision value 0.63
SVM RNA-class probability 0.804935
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17350668 118 + 20766785
AAUUUACUUGUGCGUCGGCCGGGAAUCGAACCCGGAUCAACUGCUUGGAAGGCAACUAUGCUGACCAUUACACCACCGACGCCCCUUAUAUA-UGCGAAGAA-AGUAACUGAACUUAGGC
...((((((..((((((((((((.......)))))..........(((..((((....))))..)))........)))))))..(((.....-....))).)-)))))............ ( -31.00)
>DroVir_CAF1 58547 112 + 1
AAAUUACUUGUGCGUCGGCCGGGAAUCGAACCCGGAUCAACUGCUUGGAAGGCAACUAUGCUGACCAUUACACCACCGACGCCACUUGUGAAAUACGACCAA-GUU-ACAGAAU------
...((((..((((((((((((((.......)))))..........(((..((((....))))..)))........)))))).)))..))))...........-...-.......------ ( -34.10)
>DroGri_CAF1 51673 112 + 1
AAUUGACUUGUGCGUCGGCCGGGAAUCGAACCCGGAUCAACUGCUUGGAAGGCAACUAUGCUGACCAUUACACCACCGACGCCACAUGAUAAUCAAGUUGAA-UUU-ACUAAAU------
..(..(((((.((((((((((((.......)))))..........(((..((((....))))..)))........)))))))...........)))))..).-...-.......------ ( -33.90)
>DroMoj_CAF1 64840 112 + 1
AAUUUACUUGUGCGUCGGCCGGGAAUCGAACCCGGAUCAACUGCUUGGAAGGCAACUAUGCUGACCAUUACACCACCGACGCCGCUGGGGGCACCCGAUCAA-AGU-ACAGGAU------
......(((((((((((((((((.......)))))..........(((..((((....))))..)))........))))).....((((....)))).....-.))-)))))..------ ( -38.90)
>DroAna_CAF1 59176 118 + 1
AAUUUACUUGUGCGUCGGCCGGGAAUCGAACCCGGAUCAACUGCUUGGAAGGCAACUAUGCUGACCAUUACACCACCGACGCCCCUUGAAUC-CAUCCGGAG-AAUAACCCUUCCCAAGC
......((((.((((((((((((.......)))))..........(((..((((....))))..)))........)))))))..........-.....((((-........)))))))). ( -33.50)
>DroPer_CAF1 73518 118 + 1
AUAUGACGUGUGCGUCGGCCGGGAAUCGAACCCGGAUCAACUGCUUGGAAGGCAACUAUGCUGACCAUUACACCACCGACGCCGCUUGGACU-CGAGCGGAAAUAUACCCCAUUCCAAG-
.......((((((((((((((((.......)))))..........(((..((((....))))..)))........))))))(((((((....-)))))))...)))))...........- ( -38.50)
>consensus
AAUUUACUUGUGCGUCGGCCGGGAAUCGAACCCGGAUCAACUGCUUGGAAGGCAACUAUGCUGACCAUUACACCACCGACGCCACUUGAAAA_CACGAGGAA_AAU_ACAGAAU______
.........(.((((((((((((.......)))))..........(((..((((....))))..)))........))))))))..................................... (-29.00 = -29.00 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:17 2006