Locus 5371

Sequence ID 2R_DroMel_CAF1
Location 17,349,226 – 17,349,330
Length 104
Max. P 0.871119
window8577

overview

Window 7

Location 17,349,226 – 17,349,330
Length 104
Sequences 6
Columns 111
Reading direction forward
Mean pairwise identity 73.69
Mean single sequence MFE -28.00
Consensus MFE -15.50
Energy contribution -15.33
Covariance contribution -0.16
Combinations/Pair 1.23
Mean z-score -1.78
Structure conservation index 0.55
SVM decision value 0.87
SVM RNA-class probability 0.871119
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17349226 104 + 20766785
ACCCUUGGGUGGCCAAUUUUAAGCAGAACGCGACAUCGAGCAAUCAAAACUGCCAUGAUUAAUGUCAGCACAAUUGACAUAAAGCAUUG-----GCCAUGGCCGAG--AGU
...((((((((((((((.....((((.....(....)((....))....))))........(((((((.....))))))).....))))-----)))))..)))))--... ( -30.10)
>DroVir_CAF1 57238 99 + 1
GGCCUUGGGUGGCCAAUUUCGAGGAG----------UGCACAAUCAAAACUGCCAUGAUUAAUGUCAACACAAUUGACAUAAAGUAGGAACGCGGCUGCAGCCAAA--UGU
(((.....(..(((....(((.((((----------(...........))).)).)))...(((((((.....))))))).............)))..).)))...--... ( -23.80)
>DroPse_CAF1 72954 93 + 1
AGCCUUGGGUGGC-----------AUCCAGCGACAUCCAACAAUCAAAACUGCCAUGAUUAAUGUCAACACAAUUGACAUAAAGCAUUG-----GCCAGGGCCAAG--AGC
.(((((((((.((-----------.....)).))...............((((((((.((.(((((((.....))))))).)).)).))-----).)))..)))))--.)) ( -26.40)
>DroMoj_CAF1 62865 108 + 1
AACGUUGGGUGGCCAAUUUUGAGUGGUUGGCAACGUUGCGAAAUCAAAACGGCCAUGAUUAAUGUCAACACAAUUGACAUAAAGUGCUGA-GCGGCUGCAGCCAAA--UGU
...(((.(((((((..((((((....((.(((....))).)).)))))).)))).......(((((((.....))))))).....))).)-))(((....)))...--... ( -31.90)
>DroAna_CAF1 57905 106 + 1
ACCCUUGGGUGGGCAAUUUUGAGCAGAACGCGACAUCGGGCAAUCAAAACUGCCAUGAUUAAUGUCAGCACAAUUGACAUAAAGCAUUG-----GCCAUGGCCGAGAGAGU
(((....))).((((.((((((...(..((......))..)..)))))).)))).((.((.(((((((.....))))))).)).))(((-----((....)))))...... ( -29.40)
>DroPer_CAF1 72106 93 + 1
AGCCUUGGGUGGC-----------AUCCAGCGACAUCCAACAAUCAAAACUGCCAUGAUUAAUGUCAACACAAUUGACAUAAAGCAUUG-----GCCAGGGCCAAG--AGC
.(((((((((.((-----------.....)).))...............((((((((.((.(((((((.....))))))).)).)).))-----).)))..)))))--.)) ( -26.40)
>consensus
AGCCUUGGGUGGCCAAUUUUGAG_AGAAAGCGACAUCGAACAAUCAAAACUGCCAUGAUUAAUGUCAACACAAUUGACAUAAAGCAUUG_____GCCACGGCCAAG__AGU
...((((((((((............................(((((.........))))).(((((((.....)))))))..............)))))..)))))..... (-15.50 = -15.33 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:16 2006