Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,836,282 – 2,836,380 |
Length | 98 |
Max. P | 0.961123 |
Location | 2,836,282 – 2,836,380 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 80.29 |
Mean single sequence MFE | -36.13 |
Consensus MFE | -21.55 |
Energy contribution | -21.97 |
Covariance contribution | 0.42 |
Combinations/Pair | 1.29 |
Mean z-score | -2.34 |
Structure conservation index | 0.60 |
SVM decision value | 0.86 |
SVM RNA-class probability | 0.869183 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2836282 98 + 20766785 AAGCC-CCAUCCAUGACCAGGAAUCCUA-GAUCCGUGGAUCCGGGUAUC-CGACACGGCGUGGCGGCAUUAAUAAAUGUUGCAUUGGAAAUUUAGAUGCUU ..(((-((((((.((....(((..((..-((((....))))..))..))-)..)).)).)))).))).............(((((.........))))).. ( -30.10) >DroPse_CAF1 2983 96 + 1 AAGCCCCAGGCCAUGCCCGGGGAUGCU-----CAGGUGCACUGUCUCCCCGGACGUGGGCUCGAGGCAUUAAUAAAUGUUGCAUUGGAAAUUUAGAUGCUU ..((((.((.(((((.(((((((.(..-----(((.....))).)))))))).))))).)).).))).............(((((.........))))).. ( -38.50) >DroSec_CAF1 3782 99 + 1 AAGCCCCCAUCCAUGACCAGGAACCCGA-GAUCCGGGGAUCCGGGCAUC-CGACACGGGGUGGCGGCAUUAAUAAAUGUUGCAUUGGAAAUUUAGAUGCUU ..(((.((((((.......(((.((((.-((((....))))))))..))-)......)))))).))).............(((((.........))))).. ( -36.62) >DroSim_CAF1 1902 100 + 1 AAGCCCCCAUCCAUGACCAGGAACCCGC-GAUCUGGGGAUCCGGGUAUCCCGACACGGGGUGGCGGCAUUAAUAAAUGUUGCAUUGGAAAUUUAGAUGCUU ..(((.((((((.......((((((((.-((((....))))))))).))).......)))))).))).............(((((.........))))).. ( -37.04) >DroYak_CAF1 1887 99 + 1 AAGCC-CCAUCCAUGCCCAGGAAUCCGGGGACCCAGGAGUCCGGGGAUC-CGACAUGGGAUGGCGGCAUUAAUAAAUGUUGCAUUGGAAAUUUAGAUGCUU ..(((-((((((((((((.(((.(((((....)).))).))).)))...-...))).)))))).))).............(((((.........))))).. ( -36.00) >DroPer_CAF1 9744 96 + 1 AAGCCCCAGGCCAUGCCCGGGGAUGCU-----CAGGUGCACUGUCUCCCCGGACGUGGGCUCGAGGCAUUAAUAAAUGUUGCAUUGGAAAUUUAGAUGCUU ..((((.((.(((((.(((((((.(..-----(((.....))).)))))))).))))).)).).))).............(((((.........))))).. ( -38.50) >consensus AAGCCCCCAUCCAUGACCAGGAAUCCG__GAUCCGGGGAUCCGGGUAUC_CGACACGGGGUGGCGGCAUUAAUAAAUGUUGCAUUGGAAAUUUAGAUGCUU ..(((.((((((........((((((...((((....)))).)))).))........)))))).))).............(((((.........))))).. (-21.55 = -21.97 + 0.42)
Location | 2,836,282 – 2,836,380 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 80.29 |
Mean single sequence MFE | -37.47 |
Consensus MFE | -19.42 |
Energy contribution | -19.53 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.24 |
Mean z-score | -3.31 |
Structure conservation index | 0.52 |
SVM decision value | 1.52 |
SVM RNA-class probability | 0.961123 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2836282 98 - 20766785 AAGCAUCUAAAUUUCCAAUGCAACAUUUAUUAAUGCCGCCACGCCGUGUCG-GAUACCCGGAUCCACGGAUC-UAGGAUUCCUGGUCAUGGAUGG-GGCUU ..((((...........)))).............(((.(((..((((((((-((..((..((((....))))-..))..))).)).))))).)))-))).. ( -31.20) >DroPse_CAF1 2983 96 - 1 AAGCAUCUAAAUUUCCAAUGCAACAUUUAUUAAUGCCUCGAGCCCACGUCCGGGGAGACAGUGCACCUG-----AGCAUCCCCGGGCAUGGCCUGGGGCUU ..((((...........)))).............((((((.(((...(((((((((..(((.....)))-----....)))))))))..))).)))))).. ( -37.30) >DroSec_CAF1 3782 99 - 1 AAGCAUCUAAAUUUCCAAUGCAACAUUUAUUAAUGCCGCCACCCCGUGUCG-GAUGCCCGGAUCCCCGGAUC-UCGGGUUCCUGGUCAUGGAUGGGGGCUU ..((((...........)))).............(((.(((..((((((((-(..(((((((((....))))-.)))))..)))).))))).))).))).. ( -39.70) >DroSim_CAF1 1902 100 - 1 AAGCAUCUAAAUUUCCAAUGCAACAUUUAUUAAUGCCGCCACCCCGUGUCGGGAUACCCGGAUCCCCAGAUC-GCGGGUUCCUGGUCAUGGAUGGGGGCUU ..((((...........)))).............(((.(((..(((((((((((.(((((((((....))))-.))))))))))).))))).))).))).. ( -41.30) >DroYak_CAF1 1887 99 - 1 AAGCAUCUAAAUUUCCAAUGCAACAUUUAUUAAUGCCGCCAUCCCAUGUCG-GAUCCCCGGACUCCUGGGUCCCCGGAUUCCUGGGCAUGGAUGG-GGCUU ..((((...........)))).............(((.((((((.((((((-(((((..(((((....)))))..))))))...)))))))))))-))).. ( -38.00) >DroPer_CAF1 9744 96 - 1 AAGCAUCUAAAUUUCCAAUGCAACAUUUAUUAAUGCCUCGAGCCCACGUCCGGGGAGACAGUGCACCUG-----AGCAUCCCCGGGCAUGGCCUGGGGCUU ..((((...........)))).............((((((.(((...(((((((((..(((.....)))-----....)))))))))..))).)))))).. ( -37.30) >consensus AAGCAUCUAAAUUUCCAAUGCAACAUUUAUUAAUGCCGCCACCCCAUGUCG_GAUACCCGGAUCCCCGGAUC__AGGAUUCCUGGGCAUGGAUGGGGGCUU ..((((...........)))).............(((.((...((((((((.((..((..((((....))))...))..)).))).)))))..)).))).. (-19.42 = -19.53 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:12 2006