| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 17,343,749 – 17,343,853 |
| Length | 104 |
| Max. P | 0.604496 |
| Location | 17,343,749 – 17,343,853 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 82.44 |
| Mean single sequence MFE | -29.41 |
| Consensus MFE | -21.92 |
| Energy contribution | -21.65 |
| Covariance contribution | -0.27 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.604496 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17343749 104 + 20766785 GUGGUUCUCGAACAAUUUAUGCCUUCACAGCUGUAACAUUUUGGCGAUUCAGCUGAAUUGCGCACCUCCCUAGAAAUUUCUCCUGAGAUUUCCCGUGAAGCCAG ...(((....)))......((.((((((.((.((((...((..((......))..)))))))).........((((((((....))))))))..)))))).)). ( -25.50) >DroPse_CAF1 67903 101 + 1 GUUGUCCUCAGACAGUUGAUGCCCUCGCAGCUGUAGCACUGGGGCGGCUCUGCUGCAUUCCGCACCUCUGGCGA---CUCCCAGGCAAGGGCCUGAGGGACGAC (((((((((((.(....)..(((((.((.((....)).((((((((((...)))))....(((.......))).---..))))))).))))))))).))))))) ( -44.40) >DroSec_CAF1 59763 104 + 1 GUGGUUCUUGAACAAUUUAUGCCUUCACAGCUGUAACAUUUGGGCGAUUCAGCUGAAUUUCGCACCUCCCUAGAAAUUUCUCCUGAAAUUUCCCGAGAAGCCAG .(((((((((.........(((.....((((((...(........)...))))))......)))........((((((((....)))))))).)))).))))). ( -25.20) >DroSim_CAF1 62168 104 + 1 GUGGUUCUCGAGCAAUUUAUGCCUUCACAGCUGUAACAUUUGGGCGAUUCAGCUGAAUUUCGCAUCUCCCUAGAAAUUUCUCCUGAAAUUUCCCGAGAAGCCAG .(((((((((........((((.....((((((...(........)...))))))......)))).......((((((((....)))))))).)))).))))). ( -27.90) >DroEre_CAF1 58362 104 + 1 GUGGUUCUCAAGCAAUUUAUUCCUUCACAGCUGUAACAUUUGGGCGGUUCAGCUGAAUUCCGCUCCUCCCUAGAAAUUUCUCCUGAAAUUUCCUGAGCAGCUAG ((((....................))))((((((.......(((((((((....)))..))))))....(..((((((((....))))))))..).)))))).. ( -26.65) >DroYak_CAF1 39550 104 + 1 GUGGUUCUCAAACAAUUUAUGCCUUCACAGCUGUAACAUUUUGGCGGUUCAGCUGAAUUGCGCACCUCUGCUGAAAUUUCUCCUGAAAUUUCCUGAGAAGCUAG ..(.((((((.........((((....((((((.(((.........)))))))))....).)))........((((((((....)))))))).)))))).)... ( -26.80) >consensus GUGGUUCUCAAACAAUUUAUGCCUUCACAGCUGUAACAUUUGGGCGAUUCAGCUGAAUUCCGCACCUCCCUAGAAAUUUCUCCUGAAAUUUCCCGAGAAGCCAG .(((((((((.................((((((...(........)...)))))).................((((((((....)))))))).)))).))))). (-21.92 = -21.65 + -0.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:13 2006