Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 17,337,504 – 17,337,610 |
Length | 106 |
Max. P | 0.723550 |
Location | 17,337,504 – 17,337,610 |
---|---|
Length | 106 |
Sequences | 6 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 81.90 |
Mean single sequence MFE | -26.57 |
Consensus MFE | -20.82 |
Energy contribution | -21.52 |
Covariance contribution | 0.70 |
Combinations/Pair | 1.16 |
Mean z-score | -1.61 |
Structure conservation index | 0.78 |
SVM decision value | 0.41 |
SVM RNA-class probability | 0.723550 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17337504 106 - 20766785 AUAUUUAUACAAUCAUCUAUCAUUGGCAGAUGCUUUAACCCAUAACUGGCAUUCGGGUCCCAUCAAUUGCUACGAGUGUUCCACACUCGAUGAGUGCUCUGCAGGA .........((((........))))(((((.((....((((.............))))..........(((.((((((.....))))))...)))))))))).... ( -24.02) >DroSec_CAF1 53301 94 - 1 AUA------------UCUCUUAUUUGCAGAUGCUUAUACCCACAACUGGCAUUCGGGCCCCAUCAAUUGCUACGAGUGUUCCACACUCGAUGAGUGCGCUGCAGGA ...------------.......(((((((..((((((.........(((((...((......))...)))))((((((.....))))))))))))...))))))). ( -26.30) >DroSim_CAF1 54975 94 - 1 AUA------------UCUAUUAUUUGCAGAUGCUUAUACCCACAACUGGCAUUCGGGCCCCAUCAAUUGCUACGAGUGUUCCACACUCGAUGAGUGCUCUGCAGGA ...------------.......(((((((((((((((.........(((((...((......))...)))))((((((.....))))))))))))).)))))))). ( -27.90) >DroEre_CAF1 49964 91 - 1 GCA------------UCUAUUAUUUGCAGAUGCUCU---GCACAACUGGCAUUCGGGUCCCAUCAAUUGCUAUGAGUGUUCCACACUCGACGAGUGCUCGGCAGGA (((------------(((.........))))))(((---((......(((((((((....)...........((((((.....)))))).))))))))..))))). ( -29.50) >DroYak_CAF1 33051 94 - 1 UCA------------UCUAUUACUUGCAGAUGCUUUAAUUCACAACUGGCAUUCCGGUCCCAUCAACUGCUAUGAGUGCUCCACACUCGAUGAGUGCUCUGCAGGA ...------------.......((((((((.((....(((((..(((((....)))))..............((((((.....)))))).))))))))))))))). ( -26.30) >DroAna_CAF1 41494 94 - 1 GAA------------CCUCUGUUUUGCAGAAGCCUAUGUCCACAACUGGCAUUCGGGACCCAUCAAUUGCCACGAAUGUUCCGGCCUCGAGGAGUGCUCUGCAGGA ...------------......(((((((((.((((..........((((((((((((............)).))))))..))))((....)))).))))))))))) ( -25.40) >consensus AUA____________UCUAUUAUUUGCAGAUGCUUAUACCCACAACUGGCAUUCGGGUCCCAUCAAUUGCUACGAGUGUUCCACACUCGAUGAGUGCUCUGCAGGA ......................(((((((((((((...........(((((....(....)......)))))((((((.....))))))..))))).)))))))). (-20.82 = -21.52 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:11 2006