| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 17,326,895 – 17,326,988 |
| Length | 93 |
| Max. P | 0.916044 |
| Location | 17,326,895 – 17,326,988 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 79.64 |
| Mean single sequence MFE | -33.10 |
| Consensus MFE | -19.75 |
| Energy contribution | -20.58 |
| Covariance contribution | 0.83 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.40 |
| Structure conservation index | 0.60 |
| SVM decision value | 1.11 |
| SVM RNA-class probability | 0.916044 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17326895 93 + 20766785 UAAAAGCGGCUGUCGCUGUCAGCGAACCA-AAGUUGUU----AAGAGCGGGGAAAACG-----------CGG---GGAAAACCGAG--UUAGGCGCCGUGAUAGACGCGGCGAA ....(((((((.((((.....))))....-.)))))))----....(((.......))-----------)((---......))...--.....(((((((.....))))))).. ( -29.90) >DroSec_CAF1 42625 104 + 1 UAAAAGCGGCUGUCGCUGUCAGCGAAUCA-AAGUUGGU----AACAGCGGGGAAAACGCGGGAAAAUCGCGG---GGAAAACCGAG--UUAGAGGACGUGAUAGACGCGGCGAA .....(((.(((((((.(((..(...((.-..((((..----..))))((......(((((.....))))).---......)))).--...)..)))))))))).)))...... ( -33.72) >DroSim_CAF1 45029 104 + 1 UAAAAGCGGCUGUCGCUGUCAGCGAACCA-AAGUUGGU----AACAGCGGGGAACACGCGGGAAAAUCGCGG---GGAAAGCCGAG--UUAGAGGACGUGAUAGACGCGGCGAA .....(((.(((((((.(((..(...((.-..((((..----..))))..))(((.(((((.....)))))(---(.....))..)--)).)..)))))))))).)))...... ( -34.70) >DroEre_CAF1 39456 92 + 1 UAAAAGCGGCUGUCGCUGUCAGCGAACCA-AAGUUGGC----AACAGCGGGG-AGGU-----------GCGG---GGGAAGCCGAG--UUAGGCGACGUGAUAGACGCGGCGAA .....(((.(((((((.(((.(((..((.-..((((..----..))))..))-...)-----------))..---.....(((...--...))))))))))))).)))...... ( -36.60) >DroYak_CAF1 22479 94 + 1 UAAAAGCGGCUGUCGCUGUCAGCGAAGCAAAAGUUGGC----AACAGCGGGGUAAGU-----------GGGG---GGUAAGCCGAG--UUAGGCGACGUGAUAGACGCGGCGAA .....(((.(((((((.(((.((...((....((((..----..))))...))..))-----------....---.....(((...--...))))))))))))).)))...... ( -31.70) >DroAna_CAF1 28063 102 + 1 UAAAAGCGGCUGUCGCUGUCAGCGGCCAA-AAGUUGUUGCGGAAAAGCGGGGAAAAC-----------CGGGCUACGGAAACAGAGAACCAGGCGACGUGAUAAACGCGACAAA .....(((..((((((.(((.((((((..-...((.((((......)))).))....-----------..))))..(....)..........)))))))))))..)))...... ( -32.00) >consensus UAAAAGCGGCUGUCGCUGUCAGCGAACCA_AAGUUGGU____AACAGCGGGGAAAAC___________GCGG___GGAAAACCGAG__UUAGGCGACGUGAUAGACGCGGCGAA .....(((.(((((((.(((............((((........))))...........................((....))...........)))))))))).)))...... (-19.75 = -20.58 + 0.83)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:08 2006