Locus 5363

Sequence ID 2R_DroMel_CAF1
Location 17,313,559 – 17,313,665
Length 106
Max. P 0.532799
window8568

overview

Window 8

Location 17,313,559 – 17,313,665
Length 106
Sequences 6
Columns 111
Reading direction reverse
Mean pairwise identity 86.56
Mean single sequence MFE -30.10
Consensus MFE -21.61
Energy contribution -22.62
Covariance contribution 1.01
Combinations/Pair 1.24
Mean z-score -2.82
Structure conservation index 0.72
SVM decision value -0.00
SVM RNA-class probability 0.532799
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17313559 106 - 20766785
UGAUGGCUUGUUUACGACUACAUUCCCAUAGAAUUAAUGAAUCGUUAUGGGAGCAUAAAAUAUGCAAUCGAUUGA-----AACGAGUUCAACUUCCCGAUCCCAAGCCAAA
...(((((((.....((......((((((((.(((....)))..))))))))(((((...)))))..))(((((.-----...(((.....)))..))))).))))))).. ( -26.30)
>DroSec_CAF1 37401 106 - 1
UGAUGGCUUGUUUACGACUACAUUCCCAUAGAAUUAAUGAGUCGUUAUGGGAGCAUAAAAUAUGCAAUCGAUCGA-----AACGAGGGCAACUUCCCGAUCCCAAGCCGAA
...(((((((.....((......((((((((.(((....)))..))))))))(((((...)))))..))(((((.-----...((((....)))).))))).))))))).. ( -32.80)
>DroSim_CAF1 39484 106 - 1
UGAUGGCUUGUUUACGACUACAUUCCCAUAGAAUUAAUGAGUCGUUAUGGGAGCAUAAAAUAUGCAAUCGAUCGA-----AACGAGGGCAACUUCCCGAUCCCAAGCCAAA
...(((((((.....((......((((((((.(((....)))..))))))))(((((...)))))..))(((((.-----...((((....)))).))))).))))))).. ( -33.50)
>DroEre_CAF1 34288 106 - 1
UGAUGGCUUGUUUACGACUACAUUCCAAUAGAAUUAAUGAGUCGUUAUGGGAGCAUAAAAUAUGCAAUCGAUUGA-----AACGAGGGCAACUUCCCGAUCCCAGGCCAAA
...((((((....((((((.((((...........))))))))))...(((((((((...)))))..........-----...((((....))))....)))))))))).. ( -31.00)
>DroYak_CAF1 17182 106 - 1
UGAUGGCUUAUUUACGACUACAUUCCCAUAAAAUUAAUGAGUCGUUAUGGGAGCAUAAAAUAUGCAAUUGAUUGA-----AACGAGGGCAACUUCCCGAUCGUAAGCCAAA
...((((((((............((((((((.(((....)))..))))))))(((((...)))))....(((((.-----...((((....)))).))))))))))))).. ( -31.40)
>DroPer_CAF1 39549 101 - 1
UGAUGCCUUCUUUACGAUGCCAUUCCCAUCGAAUUAACGAGUCGUUA-GGGGGCAUUAUAUAUGCAAUCGAUAGAGAGAAAAGGAGGACAAGUUCCUU--UCC-------A
(((((((((((..(((((...((((.....))))......))))).)-))))))))))...................(.(((((((......))))))--).)-------. ( -25.60)
>consensus
UGAUGGCUUGUUUACGACUACAUUCCCAUAGAAUUAAUGAGUCGUUAUGGGAGCAUAAAAUAUGCAAUCGAUUGA_____AACGAGGGCAACUUCCCGAUCCCAAGCCAAA
...(((((((....(((......((((((((.(((....)))..))))))))((((.....))))..))).............((((....)))).......))))))).. (-21.61 = -22.62 +   1.01)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:07 2006