Locus 5362

Sequence ID 2R_DroMel_CAF1
Location 17,311,589 – 17,311,684
Length 95
Max. P 0.982304
window8567

overview

Window 7

Location 17,311,589 – 17,311,684
Length 95
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 58.74
Mean single sequence MFE -27.02
Consensus MFE -16.90
Energy contribution -17.50
Covariance contribution 0.60
Combinations/Pair 1.48
Mean z-score -2.13
Structure conservation index 0.63
SVM decision value 1.91
SVM RNA-class probability 0.982304
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17311589 95 - 20766785
GUAUCCAAGUGUAUGGUAUCCAAGUGUAGGGCAUCCAAGUGAAGGGUAUCCAACUAUAGGGUACCAAAUUAUAGGGUACCAAGGUAUAGGGUACC-------------------------
((((((.......((((((((....((.((..((((.......))))..)).))....)))))))).........((((....)))).)))))).------------------------- ( -31.50)
>DroSec_CAF1 35426 95 - 1
GUAUUCAACUGGAGGGUACCAAAGUAUGGGGUACCGACGUCUAGGGAACCAAAGUCUAGGGUACCAAAGUAUAGGGUACCAAUGUAUAGUGUACC-------------------------
((((...((((...((((((...((((..(((((((((.....(....)....)))...))))))...))))..))))))......)))))))).------------------------- ( -28.30)
>DroSim_CAF1 37476 119 - 1
GUAUCCAAGUGUAGGGUAUUCAAGUGUAGGGUAUCCAAGUGAAGGUAUCCA-ACUCGAGGGUAACAAAGUAUGGGGUACCGACGUCUAGAGAACCAAAGUCUAGGGUUCCAAAGUAUAGG
..((((.((.....(((.(((.(((((..(((((((.........(((((.-......)))))..........))))))).))).)).))).))).....)).))))............. ( -28.71)
>DroEre_CAF1 32229 80 - 1
GUAUCCAAGUAUAGGGUAUCCAAGUAUAGGGUAUCCAAGCUUAGGGUUUCCCAGUUCAGGGAAUUCAGCUAUAGGGUAU---------------C-------------------------
((((((.......((((((((.......)))))))).((((..(((((.(((......))))))))))))...))))))---------------.------------------------- ( -27.40)
>DroYak_CAF1 14990 73 - 1
GUAUCCAAUCGUUGGGUAUCCAAGCAUAGGGAAUCCAAGUAUAGGGUAUCCAAAUAUAGGGUAGCC-------GUGUAU---------------C-------------------------
...........((((((.(((.......))).))))))(((((.(((((((.......)))).)))-------.)))))---------------.------------------------- ( -19.20)
>consensus
GUAUCCAAGUGUAGGGUAUCCAAGUAUAGGGUAUCCAAGUGUAGGGUAUCCAACUAUAGGGUACCAAAGUAUAGGGUACC_A_GU_UAG_G_ACC_________________________
((((((.......((((((((.......))))))))........(((((((.......)))))))........))))))......................................... (-16.90 = -17.50 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:06 2006