| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 17,309,183 – 17,309,291 |
| Length | 108 |
| Max. P | 0.837651 |
| Location | 17,309,183 – 17,309,291 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 79.21 |
| Mean single sequence MFE | -21.54 |
| Consensus MFE | -16.88 |
| Energy contribution | -16.61 |
| Covariance contribution | -0.27 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.74 |
| SVM RNA-class probability | 0.837651 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17309183 108 + 20766785 GCUAUAACA--GCUGACAAUAAAAAAAAAAAAAAAAA---CAGCAACAAUGCCACUGACAACAAUAAAUUUGUGGCACUGUUUACAUUUACAUCGUUUACGUGGUUGGCUUUG ........(--((..((.................(((---(((......((((((................)))))))))))).......((.((....))))))..)))... ( -21.09) >DroVir_CAF1 14839 94 + 1 -GCAUUACAGUGCUGGCAAUUU------------UUGUUUUAGUCGUGGAGCGACUACCAACAC------UGCUAAAUCGUUUACAUUUACACCGUUUACGUGGUUGGCCAGG -...........(((((.....------------..(((.((((((.....))))))..)))((------..((((((.((.((....)).)).))))).)..))..))))). ( -22.20) >DroSec_CAF1 33152 103 + 1 GCUAUAACA--GCUGACAAUAAAAAA-----AAAAAA---CAGCAACAAUGCCACUGACAACAAUAAAUUUGUGGCACUGUUUACAUUUACAUCGUUUACGUGGUUGGCUUUG ........(--((..((.........-----...(((---(((......((((((................)))))))))))).......((.((....))))))..)))... ( -21.09) >DroSim_CAF1 35059 101 + 1 GCUAUAACA--GCUGACAAUAAAAA-------AAAAA---CAGCAACAAUGCCACUGACAACAAUAAAUUUGUGGCACUGUUUACAUUUACAUCGUUUACGUGGUUGGCUUUG ........(--((..((........-------..(((---(((......((((((................)))))))))))).......((.((....))))))..)))... ( -21.09) >DroEre_CAF1 29408 96 + 1 GCUACAACA--GCUGACAAUAA------------AAG---CAGCAACAAUGCCACCGACAACAAUAAAUUUGUGGCACUGUUUACAUUUACACCGUUUACGUGGUCGGCUUGG .......((--((((((.....------------(((---(((......((((((.((..........)).)))))))))))).......(((.......))))))))).)). ( -22.60) >DroYak_CAF1 12333 96 + 1 GCUAUAACA--GCUGACAAUAA------------AAA---CAGCAACAAUGCCACUGACAACAAUAAAUUUGUGGCACUGUUUACAUUUACACCGUUUACGUGGUUGGCUUUG ........(--((..((.....------------(((---(((......((((((................)))))))))))).......(((.......)))))..)))... ( -21.19) >consensus GCUAUAACA__GCUGACAAUAA____________AAA___CAGCAACAAUGCCACUGACAACAAUAAAUUUGUGGCACUGUUUACAUUUACACCGUUUACGUGGUUGGCUUUG ...........((((((...........................((((.((((((................)))))).))))........((.((....)))))))))).... (-16.88 = -16.61 + -0.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:05 2006