Locus 5360

Sequence ID 2R_DroMel_CAF1
Location 17,306,637 – 17,306,740
Length 103
Max. P 0.843471
window8565

overview

Window 5

Location 17,306,637 – 17,306,740
Length 103
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 68.93
Mean single sequence MFE -35.75
Consensus MFE -14.89
Energy contribution -15.75
Covariance contribution 0.86
Combinations/Pair 1.12
Mean z-score -1.88
Structure conservation index 0.42
SVM decision value 0.76
SVM RNA-class probability 0.843471
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17306637 103 + 20766785
UAGAUUGUUUAAGAUCUUCUCAGGAUCGGAGGCGGAACGCAGAGAGGGCGUGGCACAAGCCAAAUCGCCCAGUGCUGUGGCAAGAAUCAGCAGAAGAUGAAAA
..((((((((..(((((.....)))))..))))....(((((...(((((((((....))))...)))))....))))).....))))............... ( -32.30)
>DroPse_CAF1 34608 103 + 1
CAGCGACUCCAGGAUCUUGGCUGGCUCUGCGGAGCUACGCAGACGGGGCGUGGCAAAACCCACAUCGCCCAGAGCCACCACAACGAGGAGCAGCAGACAAAUG
..((..((((.(.....(((.((((((((((......))).....((((((((......))))...))))))))))))))...)..))))..))......... ( -40.60)
>DroEre_CAF1 26804 103 + 1
UAGACUGUUUAAUAUCUUCUCUGGCUCGGAGGCGGAACGCAGAGAGGGCGUGGCCCAGGCCAAGUCGCCCAGUGCUACGGCAAGAAUCAGCAGAAGAUGAAAA
............(((((((((((..((....(((...))).....(((((((((....))))...)))))..(((....))).))..))).)))))))).... ( -38.70)
>DroYak_CAF1 9660 103 + 1
UAGAUUGUUUAAAAUCUUUUCUGGCUCGGAGGCGGAACGUAAAGAGGGCGUGGCCCAGGCGAAAUCGCCCAGUGCUAUGGCAAGAAUCAGCAGAAGAUGAAAA
.............((((((((((((((....(((...)))...)))(.(((((((..((((....))))..).)))))).).....)))).)))))))..... ( -30.00)
>DroMoj_CAF1 13491 91 + 1
CAACGACUCCAAUAUCUUGGCCGGCUCCGAGGCGCCGCGCAGACUGGGCGUGGCCAGGGCCAG---GCCCACCACUGAGGC--U-------AGCAAGCAAAUG
...............(((((((........)))(((...(((..(((((.((((....)))).---)))))...))).)))--.-------..))))...... ( -35.60)
>DroPer_CAF1 33593 100 + 1
CAGCGACUCCAGAAUCUUGGCUGGCUCUGCGGAGCUACGCAGACGGGGCGUGGCAAAACCCACAUCGCCCAGAGCC---ACAACGAGGAGCAGCAGACAAAUG
..((..((((.......(((((...((((((......))))))..((((((((......))))...))))..))))---)......))))..))......... ( -37.32)
>consensus
CAGAGACUCCAAAAUCUUGGCUGGCUCGGAGGCGCAACGCAGACAGGGCGUGGCAAAAGCCAAAUCGCCCAGUGCUACGGCAAGAAUCAGCAGAAGACAAAAA
...................((((........(((...))).....(((((((((....))))...)))))....................))))......... (-14.89 = -15.75 +   0.86)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:04 2006